Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
NPHP4O75161 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP4O75161 ARL16-209ENST00000573715 763 ntTSL 3 BASIC31.81■■■□□ 2.68
NPHP4O75161 ARL16-211ENST00000576135 694 ntTSL 3 BASIC31.81■■■□□ 2.68
NPHP4O75161 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC31.81■■■□□ 2.68
NPHP4O75161 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP4O75161 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP4O75161 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP4O75161 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP4O75161 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC31.8■■■□□ 2.68
NPHP4O75161 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP4O75161 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP4O75161 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP4O75161 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC31.8■■■□□ 2.68
NPHP4O75161 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC31.8■■■□□ 2.68
NPHP4O75161 OAS3-207ENST00000551007 998 ntTSL 2 BASIC31.8■■■□□ 2.68
NPHP4O75161 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP4O75161 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP4O75161 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP4O75161 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP4O75161 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
NPHP4O75161 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP4O75161 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP4O75161 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC31.79■■■□□ 2.68
NPHP4O75161 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC31.79■■■□□ 2.68
NPHP4O75161 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
NPHP4O75161 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC31.78■■■□□ 2.68
NPHP4O75161 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC31.78■■■□□ 2.68
NPHP4O75161 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
NPHP4O75161 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
NPHP4O75161 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC31.77■■■□□ 2.68
NPHP4O75161 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC31.77■■■□□ 2.68
NPHP4O75161 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
NPHP4O75161 FP325331.1-202ENST00000623531 1380 ntBASIC31.77■■■□□ 2.68
NPHP4O75161 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
NPHP4O75161 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP4O75161 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP4O75161 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC31.76■■■□□ 2.68
NPHP4O75161 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP4O75161 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC31.76■■■□□ 2.68
NPHP4O75161 RGMA-211ENST00000557420 989 ntTSL 3 BASIC31.76■■■□□ 2.68
NPHP4O75161 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP4O75161 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
NPHP4O75161 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC31.76■■■□□ 2.67
NPHP4O75161 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP4O75161 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP4O75161 AC231657.2-201ENST00000624556 255 ntBASIC31.75■■■□□ 2.67
NPHP4O75161 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC31.75■■■□□ 2.67
NPHP4O75161 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP4O75161 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP4O75161 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC31.75■■■□□ 2.67
NPHP4O75161 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
NPHP4O75161 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
NPHP4O75161 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC31.75■■■□□ 2.67
NPHP4O75161 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC31.75■■■□□ 2.67
NPHP4O75161 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC31.75■■■□□ 2.67
NPHP4O75161 AC005181.1-201ENST00000604782 1256 ntBASIC31.75■■■□□ 2.67
NPHP4O75161 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP4O75161 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP4O75161 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC31.74■■■□□ 2.67
NPHP4O75161 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC31.74■■■□□ 2.67
NPHP4O75161 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC31.74■■■□□ 2.67
NPHP4O75161 TBCB-214ENST00000629269 413 ntTSL 5 BASIC31.74■■■□□ 2.67
NPHP4O75161 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP4O75161 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC31.73■■■□□ 2.67
NPHP4O75161 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP4O75161 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC31.73■■■□□ 2.67
NPHP4O75161 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP4O75161 SLC29A4P1-201ENST00000398760 971 ntBASIC31.73■■■□□ 2.67
NPHP4O75161 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC31.73■■■□□ 2.67
NPHP4O75161 DUX4L16-201ENST00000555130 1264 ntBASIC31.73■■■□□ 2.67
NPHP4O75161 AC098934.4-201ENST00000564127 592 ntBASIC31.73■■■□□ 2.67
NPHP4O75161 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC31.73■■■□□ 2.67
NPHP4O75161 AC087239.1-201ENST00000622671 572 ntBASIC31.73■■■□□ 2.67
NPHP4O75161 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC31.73■■■□□ 2.67
NPHP4O75161 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP4O75161 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.72■■■□□ 2.67
NPHP4O75161 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP4O75161 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC31.72■■■□□ 2.67
NPHP4O75161 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP4O75161 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC31.72■■■□□ 2.67
NPHP4O75161 PFKL-212ENST00000628044 129 ntTSL 3 BASIC31.72■■■□□ 2.67
NPHP4O75161 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP4O75161 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP4O75161 AC092803.2-201ENST00000564287 1899 ntBASIC31.72■■■□□ 2.67
NPHP4O75161 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
NPHP4O75161 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
NPHP4O75161 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC31.71■■■□□ 2.67
NPHP4O75161 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC31.71■■■□□ 2.67
NPHP4O75161 CPT2-209ENST00000636935 803 ntTSL 5 BASIC31.71■■■□□ 2.67
NPHP4O75161 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.71■■■□□ 2.67
NPHP4O75161 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
NPHP4O75161 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC31.71■■■□□ 2.67
NPHP4O75161 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.71■■■□□ 2.67
NPHP4O75161 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
NPHP4O75161 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC31.7■■■□□ 2.67
NPHP4O75161 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.67
NPHP4O75161 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
NPHP4O75161 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC31.7■■■□□ 2.67
NPHP4O75161 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC31.7■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms