Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SGCEO43556 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
SGCEO43556 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SGCEO43556 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SGCEO43556 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SGCEO43556 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.48■□□□□ 0.71
SGCEO43556 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SGCEO43556 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.48■□□□□ 0.71
SGCEO43556 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SGCEO43556 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
SGCEO43556 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SGCEO43556 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.47■□□□□ 0.71
SGCEO43556 C17orf82-201ENST00000623772 1530 ntBASIC19.47■□□□□ 0.71
SGCEO43556 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SGCEO43556 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SGCEO43556 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SGCEO43556 AL356441.2-201ENST00000443009 864 ntBASIC19.47■□□□□ 0.71
SGCEO43556 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.47■□□□□ 0.71
SGCEO43556 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SGCEO43556 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SGCEO43556 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SGCEO43556 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SGCEO43556 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.46■□□□□ 0.71
SGCEO43556 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.46■□□□□ 0.71
SGCEO43556 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SGCEO43556 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SGCEO43556 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SGCEO43556 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SGCEO43556 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SGCEO43556 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.45■□□□□ 0.7
SGCEO43556 DUX4L4-201ENST00000566884 1269 ntBASIC19.45■□□□□ 0.7
SGCEO43556 MIR3621-201ENST00000580529 85 ntBASIC19.45■□□□□ 0.7
SGCEO43556 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SGCEO43556 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SGCEO43556 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SGCEO43556 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SGCEO43556 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SGCEO43556 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SGCEO43556 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SGCEO43556 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SGCEO43556 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.43■□□□□ 0.7
SGCEO43556 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.43■□□□□ 0.7
SGCEO43556 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.43■□□□□ 0.7
SGCEO43556 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.43■□□□□ 0.7
SGCEO43556 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.43■□□□□ 0.7
SGCEO43556 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SGCEO43556 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.43■□□□□ 0.7
SGCEO43556 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SGCEO43556 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.42■□□□□ 0.7
SGCEO43556 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SGCEO43556 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SGCEO43556 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SGCEO43556 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SGCEO43556 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SGCEO43556 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.42■□□□□ 0.7
SGCEO43556 C1orf229-201ENST00000623686 2258 ntBASIC19.42■□□□□ 0.7
SGCEO43556 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SGCEO43556 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.42■□□□□ 0.7
SGCEO43556 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SGCEO43556 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SGCEO43556 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.41■□□□□ 0.7
SGCEO43556 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 AC009086.3-201ENST00000623486 1008 ntBASIC19.41■□□□□ 0.7
SGCEO43556 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.41■□□□□ 0.7
SGCEO43556 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.41■□□□□ 0.7
SGCEO43556 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SGCEO43556 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SGCEO43556 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SGCEO43556 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SGCEO43556 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.4■□□□□ 0.7
SGCEO43556 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SGCEO43556 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SGCEO43556 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.4■□□□□ 0.7
SGCEO43556 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms