Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC15.83■□□□□ 0.12
HMGB1P09429 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGB1P09429 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 MPPE1-204ENST00000344987 1831 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 KLHL38-201ENST00000325995 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 FAM21EP-201ENST00000417804 985 ntBASIC15.82■□□□□ 0.12
HMGB1P09429 PSAT1P2-201ENST00000426107 972 ntBASIC15.82■□□□□ 0.12
HMGB1P09429 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB1P09429 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC15.82■□□□□ 0.12
HMGB1P09429 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 U62317.3-201ENST00000608319 855 ntBASIC15.82■□□□□ 0.12
HMGB1P09429 COX6A1P2-201ENST00000620597 330 ntBASIC15.82■□□□□ 0.12
HMGB1P09429 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGB1P09429 IL18BP-202ENST00000337131 1606 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HMGB1P09429 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGB1P09429 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGB1P09429 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
HMGB1P09429 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 MARVELD2-201ENST00000325631 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 SH2D2A-203ENST00000392306 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 PPARA-202ENST00000402126 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 DMKN-203ENST00000402589 935 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 AL357140.1-201ENST00000454104 424 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 AC107959.3-201ENST00000520840 484 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 IGHVII-33-1-201ENST00000524010 280 ntBASIC15.81■□□□□ 0.12
HMGB1P09429 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 FAM187B2P-201ENST00000577135 713 ntBASIC15.81■□□□□ 0.12
HMGB1P09429 RN7SL162P-201ENST00000579233 292 ntBASIC15.81■□□□□ 0.12
HMGB1P09429 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 AL118522.1-201ENST00000611368 560 ntBASIC15.81■□□□□ 0.12
HMGB1P09429 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
HMGB1P09429 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB1P09429 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB1P09429 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB1P09429 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB1P09429 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGB1P09429 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB1P09429 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB1P09429 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGB1P09429 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB1P09429 NAMA-207ENST00000605707 1748 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB1P09429 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HMGB1P09429 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms