Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB1P09429 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HMGB1P09429 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB1P09429 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 AL136982.5-201ENST00000605222 294 ntBASIC15.87■□□□□ 0.13
HMGB1P09429 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB1P09429 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB1P09429 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB1P09429 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 FUCA1P1-201ENST00000374476 1351 ntBASIC15.87■□□□□ 0.13
HMGB1P09429 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 AC073862.3-201ENST00000624597 1648 ntBASIC15.86■□□□□ 0.13
HMGB1P09429 AC102953.2-201ENST00000609755 3026 ntBASIC15.86■□□□□ 0.13
HMGB1P09429 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 AC027020.2-201ENST00000602585 2389 ntBASIC15.86■□□□□ 0.13
HMGB1P09429 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 AC004899.2-201ENST00000622993 3860 ntBASIC15.86■□□□□ 0.13
HMGB1P09429 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 MRPL27-201ENST00000225969 716 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB1P09429 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB1P09429 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB1P09429 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 SLC25A51P3-201ENST00000521814 889 ntBASIC15.86■□□□□ 0.13
HMGB1P09429 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB1P09429 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB1P09429 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.86■□□□□ 0.13
HMGB1P09429 AC135983.4-201ENST00000564116 1262 ntBASIC15.86■□□□□ 0.13
HMGB1P09429 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB1P09429 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB1P09429 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.86■□□□□ 0.13
HMGB1P09429 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 NEAT1-204ENST00000612303 572 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB1P09429 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB1P09429 AC021517.1-202ENST00000585897 2111 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 ZNF772-203ENST00000425074 1601 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB1P09429 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 ADPRH-202ENST00000465513 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HMGB1P09429 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB1P09429 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB1P09429 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
HMGB1P09429 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGB1P09429 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB1P09429 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HMGB1P09429 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 LINC02228-202ENST00000641261 2489 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.85■□□□□ 0.13
HMGB1P09429 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB1P09429 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.85■□□□□ 0.13
HMGB1P09429 GNG10P1-201ENST00000452289 199 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC15.85■□□□□ 0.13
HMGB1P09429 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC15.85■□□□□ 0.13
HMGB1P09429 RHOQP1-201ENST00000555758 579 ntBASIC15.85■□□□□ 0.13
HMGB1P09429 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB1P09429 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms