Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 FAM8A2P-201ENST00000528813 1142 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AP006547.1-201ENST00000563435 692 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 MIR4525-201ENST00000580000 75 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AC092299.1-201ENST00000632679 757 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 ZMIZ2-215ENST00000615423 2772 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AC138761.6-201ENST00000583997 1423 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 TMEM86A-201ENST00000280734 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 ECM1-202ENST00000369047 2070 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 CICP19-201ENST00000632944 2357 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 DNASE1L1-205ENST00000369809 3008 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AL450468.2-201ENST00000565955 1889 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 TXNDC2-202ENST00000357775 2830 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 RUFY4-202ENST00000374155 2977 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 ELMOD3-202ENST00000393852 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 AC040160.2-201ENST00000623816 1675 ntBASIC14.97□□□□□ -0.01
CCDC112Q8NEF3 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 ZNF773-205ENST00000599847 5832 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 LIG1-221ENST00000613670 3949 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 PTGR2-204ENST00000555228 2543 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AC087164.2-201ENST00000624514 3130 ntBASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 NLRP7-202ENST00000340844 3250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 LRRC8A-201ENST00000259324 4619 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 PHYHIP-201ENST00000321613 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 C10orf76-202ENST00000370033 4119 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 RPL7P3-201ENST00000441388 714 ntBASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AC080013.1-204ENST00000607426 2185 ntBASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 ABI1-212ENST00000490841 3188 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 AL357140.3-201ENST00000639753 1983 ntBASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 DLGAP1-212ENST00000515196 5314 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC112Q8NEF3 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 SV2A-202ENST00000369146 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 AC005154.3-201ENST00000419639 1393 ntBASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 C5orf15-201ENST00000231512 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC14.96□□□□□ -0.02
CCDC112Q8NEF3 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 ERP44-201ENST00000262455 4854 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 SERPINA1-205ENST00000404814 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 ZNF701-204ENST00000540331 5538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 CFAP65-204ENST00000410037 2703 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 APEH-201ENST00000296456 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 C1QTNF9B-202ENST00000382140 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 ANKRD19P-201ENST00000338192 862 ntBASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 AC007551.1-201ENST00000457394 519 ntBASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 AC106794.1-201ENST00000506935 792 ntBASIC14.95□□□□□ -0.02
CCDC112Q8NEF3 RNA5SP412-201ENST00000516234 123 ntBASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms