Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 NAGK-204ENST00000443872 878 ntTSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 TUBB8P8-201ENST00000458717 1058 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 GOLGA2P8-201ENST00000505201 779 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 IGHEP1-201ENST00000521393 651 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FOS-204ENST00000554617 796 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC138894.2-201ENST00000602838 371 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC009884.2-201ENST00000603110 324 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 Z98259.2-201ENST00000641583 609 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FER1L5-204ENST00000623019 6477 ntAPPRIS ALT2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 MROH7-TTC4-201ENST00000414150 5867 ntAPPRIS P5 TSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AC244394.1-201ENST00000435000 1665 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 GPRASP1-201ENST00000361600 5971 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PPP1R26P2-201ENST00000611403 3595 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AHCYP4-201ENST00000419201 1315 ntBASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AC002350.2-201ENST00000623894 1828 ntBASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 SLC6A1-201ENST00000287766 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 BTBD3-204ENST00000405977 5137 ntAPPRIS P4 TSL 5 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 OS9-206ENST00000435406 2346 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 SGSM1-201ENST00000400358 6643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 RN7SKP214-201ENST00000364208 315 ntBASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 HNRNPA1P41-201ENST00000397777 928 ntBASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 HIST2H2BB-201ENST00000449108 381 ntBASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AC073150.1-201ENST00000450406 1084 ntBASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AREG-202ENST00000502307 956 ntTSL 5 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
PDLIM3Q53GG5 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms