Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 HNRNPA1P58-201ENST00000403629 610 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 IQCF4-203ENST00000428561 420 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 RBM14-205ENST00000443702 732 ntTSL 3 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 AP000533.1-201ENST00000456143 1177 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 AC093700.1-201ENST00000503348 717 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 AC092612.1-201ENST00000514501 998 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 AC133555.4-201ENST00000569081 152 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 PRR20FP-201ENST00000603320 180 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 AP001527.2-201ENST00000614441 631 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 AC020922.4-201ENST00000621389 339 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 EGLN3-205ENST00000547327 2849 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.86■□□□□ 0.13
HLA-DOAP06340 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DOAP06340 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC15.86■□□□□ 0.13
HLA-DOAP06340 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC091807.1-201ENST00000418838 1544 ntBASIC15.85■□□□□ 0.13
HLA-DOAP06340 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 ACTBP7-201ENST00000418351 1124 ntBASIC15.85■□□□□ 0.13
HLA-DOAP06340 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 IGHVII-33-1-201ENST00000524010 280 ntBASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 GRAMD4P6-201ENST00000556999 244 ntBASIC15.85■□□□□ 0.13
HLA-DOAP06340 SRP14-208ENST00000560773 468 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DOAP06340 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DOAP06340 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 STK25-235ENST00000543554 2556 ntTSL 2 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms