Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 ESRRAP2-201ENST00000418437 1549 ntBASIC20.19■□□□□ 0.82
SHANK1Q9Y566 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 AC006015.1-201ENST00000429970 570 ntBASIC20.19■□□□□ 0.82
SHANK1Q9Y566 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK1Q9Y566 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 AC137761.2-201ENST00000561729 223 ntBASIC20.18■□□□□ 0.82
SHANK1Q9Y566 AC145350.3-201ENST00000569033 163 ntBASIC20.18■□□□□ 0.82
SHANK1Q9Y566 AC073111.5-205ENST00000641717 521 ntBASIC20.18■□□□□ 0.82
SHANK1Q9Y566 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK1Q9Y566 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 AC026185.1-201ENST00000445748 174 ntBASIC20.17■□□□□ 0.82
SHANK1Q9Y566 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 AC104771.1-201ENST00000603335 964 ntBASIC20.17■□□□□ 0.82
SHANK1Q9Y566 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SHANK1Q9Y566 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.16■□□□□ 0.82
SHANK1Q9Y566 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 TPRG1LP1-201ENST00000598702 760 ntBASIC20.16■□□□□ 0.82
SHANK1Q9Y566 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHANK1Q9Y566 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
SHANK1Q9Y566 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.14■□□□□ 0.82
SHANK1Q9Y566 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
SHANK1Q9Y566 AP005435.1-201ENST00000529293 1178 ntBASIC20.14■□□□□ 0.81
SHANK1Q9Y566 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.14■□□□□ 0.81
SHANK1Q9Y566 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK1Q9Y566 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SHANK1Q9Y566 AC080038.1-201ENST00000611274 1154 ntBASIC20.14■□□□□ 0.81
SHANK1Q9Y566 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.14■□□□□ 0.81
SHANK1Q9Y566 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHANK1Q9Y566 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 OR2I1P-207ENST00000453522 948 ntBASIC20.13■□□□□ 0.81
SHANK1Q9Y566 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHANK1Q9Y566 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.12■□□□□ 0.81
SHANK1Q9Y566 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms