Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USE1Q9NZ43 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.65■□□□□ 0.9
USE1Q9NZ43 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
USE1Q9NZ43 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USE1Q9NZ43 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USE1Q9NZ43 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
USE1Q9NZ43 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USE1Q9NZ43 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USE1Q9NZ43 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.64■□□□□ 0.9
USE1Q9NZ43 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.64■□□□□ 0.89
USE1Q9NZ43 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USE1Q9NZ43 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USE1Q9NZ43 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
USE1Q9NZ43 RPS2P7-201ENST00000447334 885 ntBASIC20.64■□□□□ 0.89
USE1Q9NZ43 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
USE1Q9NZ43 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USE1Q9NZ43 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USE1Q9NZ43 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USE1Q9NZ43 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USE1Q9NZ43 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.63■□□□□ 0.89
USE1Q9NZ43 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USE1Q9NZ43 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USE1Q9NZ43 MIR4449-201ENST00000578365 66 ntBASIC20.63■□□□□ 0.89
USE1Q9NZ43 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.63■□□□□ 0.89
USE1Q9NZ43 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USE1Q9NZ43 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USE1Q9NZ43 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
USE1Q9NZ43 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
USE1Q9NZ43 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 AC080038.3-201ENST00000623346 1952 ntBASIC20.61■□□□□ 0.89
USE1Q9NZ43 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.61■□□□□ 0.89
USE1Q9NZ43 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.61■□□□□ 0.89
USE1Q9NZ43 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 AC022413.1-201ENST00000624602 984 ntBASIC20.61■□□□□ 0.89
USE1Q9NZ43 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USE1Q9NZ43 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USE1Q9NZ43 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
USE1Q9NZ43 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.6■□□□□ 0.89
USE1Q9NZ43 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.6■□□□□ 0.89
USE1Q9NZ43 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
USE1Q9NZ43 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
USE1Q9NZ43 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USE1Q9NZ43 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.59■□□□□ 0.89
USE1Q9NZ43 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USE1Q9NZ43 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.59■□□□□ 0.89
USE1Q9NZ43 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.59■□□□□ 0.89
USE1Q9NZ43 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USE1Q9NZ43 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USE1Q9NZ43 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.59■□□□□ 0.89
USE1Q9NZ43 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USE1Q9NZ43 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
USE1Q9NZ43 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USE1Q9NZ43 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USE1Q9NZ43 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.58■□□□□ 0.89
USE1Q9NZ43 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.58■□□□□ 0.89
USE1Q9NZ43 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.58■□□□□ 0.88
USE1Q9NZ43 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
USE1Q9NZ43 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USE1Q9NZ43 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USE1Q9NZ43 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USE1Q9NZ43 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USE1Q9NZ43 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.57■□□□□ 0.88
USE1Q9NZ43 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USE1Q9NZ43 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USE1Q9NZ43 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USE1Q9NZ43 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USE1Q9NZ43 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.57■□□□□ 0.88
USE1Q9NZ43 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.56■□□□□ 0.88
USE1Q9NZ43 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USE1Q9NZ43 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms