Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 DUSP8P5-201ENST00000422884 1815 ntBASIC21.11■□□□□ 0.97
SCN3AQ9NY46 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN3AQ9NY46 SLC47A1P1-202ENST00000449666 945 ntBASIC21.11■□□□□ 0.97
SCN3AQ9NY46 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN3AQ9NY46 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 AC011298.3-201ENST00000615796 283 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 AC009086.3-201ENST00000623486 1008 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 LINC01529-204ENST00000636474 1715 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 AC135279.3-201ENST00000610945 1311 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 MIR638-201ENST00000385237 100 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 PBX2P1-201ENST00000493219 1291 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 AC010525.1-201ENST00000585559 441 ntBASIC21.09■□□□□ 0.97
SCN3AQ9NY46 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.09■□□□□ 0.97
SCN3AQ9NY46 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN3AQ9NY46 AC004687.1-201ENST00000579003 1625 ntBASIC21.08■□□□□ 0.97
SCN3AQ9NY46 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SCN3AQ9NY46 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN3AQ9NY46 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN3AQ9NY46 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN3AQ9NY46 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
SCN3AQ9NY46 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SCN3AQ9NY46 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.96
SCN3AQ9NY46 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SCN3AQ9NY46 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SCN3AQ9NY46 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
SCN3AQ9NY46 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 pRNA.6-201ENST00000610482 90 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 pRNA.5-201ENST00000612139 90 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 pRNA.11-201ENST00000618423 90 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 pRNA.13-201ENST00000619112 90 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 MIR3181-201ENST00000578512 73 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 AL139246.5-201ENST00000606645 996 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 AL136162.1-201ENST00000607711 1078 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 AC019069.1-201ENST00000610008 1333 ntBASIC21.05■□□□□ 0.96
SCN3AQ9NY46 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms