Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CUEDC1Q9NWM3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 DUX4L4-201ENST00000566884 1269 ntBASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 AC009086.3-201ENST00000623486 1008 ntBASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CUEDC1Q9NWM3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 C9orf163-202ENST00000624034 2573 ntBASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 AC104564.3-201ENST00000582367 638 ntBASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 AC241377.3-202ENST00000626088 1088 ntBASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 AC241585.3-202ENST00000628937 1088 ntBASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 AC245100.8-202ENST00000629247 1058 ntBASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CUEDC1Q9NWM3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.02
CUEDC1Q9NWM3 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.44■■□□□ 1.02
CUEDC1Q9NWM3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CUEDC1Q9NWM3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.42■■□□□ 1.02
CUEDC1Q9NWM3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CUEDC1Q9NWM3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CUEDC1Q9NWM3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CUEDC1Q9NWM3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 pRNA.6-201ENST00000610482 90 ntBASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 pRNA.5-201ENST00000612139 90 ntBASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 pRNA.11-201ENST00000618423 90 ntBASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 pRNA.13-201ENST00000619112 90 ntBASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.41■■□□□ 1.02
CUEDC1Q9NWM3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.4■■□□□ 1.02
CUEDC1Q9NWM3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms