Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 RAP2CP1-201ENST00000605103 478 ntBASIC24.54■■□□□ 1.52
HIPK3Q9H422 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.54■■□□□ 1.52
HIPK3Q9H422 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HIPK3Q9H422 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HIPK3Q9H422 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HIPK3Q9H422 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 CDCA4P2-201ENST00000441182 718 ntBASIC24.53■■□□□ 1.52
HIPK3Q9H422 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HIPK3Q9H422 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 AC073111.5-205ENST00000641717 521 ntBASIC24.53■■□□□ 1.52
HIPK3Q9H422 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
HIPK3Q9H422 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HIPK3Q9H422 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
HIPK3Q9H422 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.52■■□□□ 1.52
HIPK3Q9H422 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.52■■□□□ 1.52
HIPK3Q9H422 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
HIPK3Q9H422 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.51■■□□□ 1.51
HIPK3Q9H422 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.51■■□□□ 1.51
HIPK3Q9H422 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.51■■□□□ 1.51
HIPK3Q9H422 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
HIPK3Q9H422 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HIPK3Q9H422 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
HIPK3Q9H422 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HIPK3Q9H422 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HIPK3Q9H422 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.5■■□□□ 1.51
HIPK3Q9H422 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HIPK3Q9H422 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HIPK3Q9H422 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.5■■□□□ 1.51
HIPK3Q9H422 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.5■■□□□ 1.51
HIPK3Q9H422 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.5■■□□□ 1.51
HIPK3Q9H422 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.5■■□□□ 1.51
HIPK3Q9H422 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.49■■□□□ 1.51
HIPK3Q9H422 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
HIPK3Q9H422 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.49■■□□□ 1.51
HIPK3Q9H422 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
HIPK3Q9H422 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.49■■□□□ 1.51
HIPK3Q9H422 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HIPK3Q9H422 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HIPK3Q9H422 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HIPK3Q9H422 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.49■■□□□ 1.51
HIPK3Q9H422 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
HIPK3Q9H422 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
HIPK3Q9H422 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.48■■□□□ 1.51
HIPK3Q9H422 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
HIPK3Q9H422 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
HIPK3Q9H422 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.48■■□□□ 1.51
HIPK3Q9H422 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.48■■□□□ 1.51
HIPK3Q9H422 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.48■■□□□ 1.51
HIPK3Q9H422 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.48■■□□□ 1.51
HIPK3Q9H422 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HIPK3Q9H422 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HIPK3Q9H422 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HIPK3Q9H422 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
HIPK3Q9H422 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
HIPK3Q9H422 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.47■■□□□ 1.51
HIPK3Q9H422 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.46■■□□□ 1.51
HIPK3Q9H422 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HIPK3Q9H422 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.46■■□□□ 1.51
HIPK3Q9H422 AC026185.1-201ENST00000445748 174 ntBASIC24.46■■□□□ 1.51
HIPK3Q9H422 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.46■■□□□ 1.51
HIPK3Q9H422 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.46■■□□□ 1.51
HIPK3Q9H422 TPRG1LP1-201ENST00000598702 760 ntBASIC24.46■■□□□ 1.51
HIPK3Q9H422 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
HIPK3Q9H422 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
HIPK3Q9H422 LINC01529-204ENST00000636474 1715 ntBASIC24.46■■□□□ 1.51
HIPK3Q9H422 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HIPK3Q9H422 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.51
HIPK3Q9H422 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.45■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms