Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.73■■□□□ 1.39
CDX2Q99626 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDX2Q99626 DUX4L16-201ENST00000555130 1264 ntBASIC23.73■■□□□ 1.39
CDX2Q99626 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CDX2Q99626 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC23.73■■□□□ 1.39
CDX2Q99626 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
CDX2Q99626 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
CDX2Q99626 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.73■■□□□ 1.39
CDX2Q99626 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDX2Q99626 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CDX2Q99626 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CDX2Q99626 BX005040.4-201ENST00000637145 1518 ntBASIC23.72■■□□□ 1.39
CDX2Q99626 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
CDX2Q99626 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CDX2Q99626 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CDX2Q99626 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.71■■□□□ 1.39
CDX2Q99626 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CDX2Q99626 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.71■■□□□ 1.39
CDX2Q99626 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CDX2Q99626 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.71■■□□□ 1.39
CDX2Q99626 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.71■■□□□ 1.39
CDX2Q99626 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.71■■□□□ 1.39
CDX2Q99626 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CDX2Q99626 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CDX2Q99626 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CDX2Q99626 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
CDX2Q99626 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CDX2Q99626 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.7■■□□□ 1.38
CDX2Q99626 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CDX2Q99626 RPS2P4-201ENST00000476944 856 ntBASIC23.7■■□□□ 1.38
CDX2Q99626 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.38
CDX2Q99626 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.7■■□□□ 1.38
CDX2Q99626 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CDX2Q99626 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
CDX2Q99626 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
CDX2Q99626 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX2Q99626 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX2Q99626 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX2Q99626 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX2Q99626 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX2Q99626 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.69■■□□□ 1.38
CDX2Q99626 GCSHP5-201ENST00000443090 522 ntBASIC23.69■■□□□ 1.38
CDX2Q99626 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.69■■□□□ 1.38
CDX2Q99626 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.69■■□□□ 1.38
CDX2Q99626 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX2Q99626 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.68■■□□□ 1.38
CDX2Q99626 AF201337.1-201ENST00000520239 748 ntBASIC23.68■■□□□ 1.38
CDX2Q99626 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC23.68■■□□□ 1.38
CDX2Q99626 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.68■■□□□ 1.38
CDX2Q99626 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.68■■□□□ 1.38
CDX2Q99626 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.68■■□□□ 1.38
CDX2Q99626 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDX2Q99626 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CDX2Q99626 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CDX2Q99626 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CDX2Q99626 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
CDX2Q99626 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CDX2Q99626 MIR1224-201ENST00000408193 85 ntBASIC23.67■■□□□ 1.38
CDX2Q99626 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CDX2Q99626 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.67■■□□□ 1.38
CDX2Q99626 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CDX2Q99626 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDX2Q99626 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
CDX2Q99626 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.66■■□□□ 1.38
CDX2Q99626 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.66■■□□□ 1.38
CDX2Q99626 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CDX2Q99626 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.65■■□□□ 1.38
CDX2Q99626 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CDX2Q99626 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
CDX2Q99626 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
CDX2Q99626 ERN1-208ENST00000606895 2068 ntBASIC23.65■■□□□ 1.38
CDX2Q99626 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.65■■□□□ 1.38
CDX2Q99626 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
CDX2Q99626 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.65■■□□□ 1.38
CDX2Q99626 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.65■■□□□ 1.38
CDX2Q99626 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.65■■□□□ 1.38
CDX2Q99626 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.65■■□□□ 1.38
CDX2Q99626 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.65■■□□□ 1.38
CDX2Q99626 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CDX2Q99626 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CDX2Q99626 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.65■■□□□ 1.38
CDX2Q99626 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CDX2Q99626 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CDX2Q99626 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
CDX2Q99626 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.64■■□□□ 1.37
CDX2Q99626 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CDX2Q99626 SLC7A5P1-201ENST00000568957 537 ntBASIC23.64■■□□□ 1.37
CDX2Q99626 AC105036.2-201ENST00000569468 176 ntBASIC23.64■■□□□ 1.37
CDX2Q99626 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CDX2Q99626 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDX2Q99626 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.63■■□□□ 1.37
CDX2Q99626 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDX2Q99626 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
CDX2Q99626 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms