Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCD3Q96EY7 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.05■■□□□ 1.12
PTCD3Q96EY7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 AC004448.1-201ENST00000458332 883 ntBASIC22.04■■□□□ 1.12
PTCD3Q96EY7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCD3Q96EY7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 ALDH1A3-203ENST00000557963 1670 ntBASIC22.03■■□□□ 1.12
PTCD3Q96EY7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PTCD3Q96EY7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 RARRES2P1-201ENST00000474487 481 ntBASIC22.02■■□□□ 1.12
PTCD3Q96EY7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.02■■□□□ 1.12
PTCD3Q96EY7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.02■■□□□ 1.11
PTCD3Q96EY7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.02■■□□□ 1.11
PTCD3Q96EY7 ESRRAP2-201ENST00000418437 1549 ntBASIC22.01■■□□□ 1.11
PTCD3Q96EY7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 SLC25A24-204ENST00000569674 2357 ntBASIC22.01■■□□□ 1.11
PTCD3Q96EY7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCD3Q96EY7 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCD3Q96EY7 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22■■□□□ 1.11
PTCD3Q96EY7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22■■□□□ 1.11
PTCD3Q96EY7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
PTCD3Q96EY7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCD3Q96EY7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
PTCD3Q96EY7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22■■□□□ 1.11
PTCD3Q96EY7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCD3Q96EY7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 BX664725.1-201ENST00000438252 379 ntBASIC21.98■■□□□ 1.11
PTCD3Q96EY7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.98■■□□□ 1.11
PTCD3Q96EY7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 AC021242.3-201ENST00000607598 1377 ntBASIC21.97■■□□□ 1.11
PTCD3Q96EY7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCD3Q96EY7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCD3Q96EY7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
PTCD3Q96EY7 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.96■■□□□ 1.11
PTCD3Q96EY7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.96■■□□□ 1.11
PTCD3Q96EY7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.96■■□□□ 1.11
PTCD3Q96EY7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms