Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 DUX4L18-201ENST00000553347 1267 ntBASIC21.19■□□□□ 0.98
RETREG3Q86VR2 MIR4281-201ENST00000580852 62 ntBASIC21.19■□□□□ 0.98
RETREG3Q86VR2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 AL024507.2-201ENST00000606070 2574 ntBASIC21.19■□□□□ 0.98
RETREG3Q86VR2 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RETREG3Q86VR2 FBXW4P1-201ENST00000426721 2239 ntBASIC21.19■□□□□ 0.98
RETREG3Q86VR2 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
RETREG3Q86VR2 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 AC139795.1-202ENST00000500444 432 ntBASIC21.17■□□□□ 0.98
RETREG3Q86VR2 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RETREG3Q86VR2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.16■□□□□ 0.98
RETREG3Q86VR2 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 THA1P-201ENST00000590384 1145 ntBASIC21.15■□□□□ 0.98
RETREG3Q86VR2 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.15■□□□□ 0.98
RETREG3Q86VR2 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RETREG3Q86VR2 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.14■□□□□ 0.98
RETREG3Q86VR2 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RETREG3Q86VR2 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RETREG3Q86VR2 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
RETREG3Q86VR2 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
RETREG3Q86VR2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RETREG3Q86VR2 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
RETREG3Q86VR2 PVT1_1.1-201ENST00000615125 194 ntBASIC21.14■□□□□ 0.97
RETREG3Q86VR2 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RETREG3Q86VR2 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RETREG3Q86VR2 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RETREG3Q86VR2 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RETREG3Q86VR2 KRT18P24-201ENST00000344739 1156 ntBASIC21.13■□□□□ 0.97
RETREG3Q86VR2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RETREG3Q86VR2 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RETREG3Q86VR2 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RETREG3Q86VR2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 AC144652.1-201ENST00000609974 1624 ntBASIC21.12■□□□□ 0.97
RETREG3Q86VR2 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RETREG3Q86VR2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
RETREG3Q86VR2 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms