Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TPM1P09493 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
TPM1P09493 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
TPM1P09493 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TPM1P09493 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TPM1P09493 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
TPM1P09493 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
TPM1P09493 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
TPM1P09493 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
TPM1P09493 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
TPM1P09493 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TPM1P09493 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.39■■□□□ 1.5
TPM1P09493 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
TPM1P09493 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TPM1P09493 RARRES2P2-201ENST00000394842 485 ntBASIC24.39■■□□□ 1.49
TPM1P09493 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
TPM1P09493 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.39■■□□□ 1.49
TPM1P09493 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.39■■□□□ 1.49
TPM1P09493 U85056.1-201ENST00000616429 682 ntBASIC24.39■■□□□ 1.49
TPM1P09493 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TPM1P09493 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TPM1P09493 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
TPM1P09493 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.38■■□□□ 1.49
TPM1P09493 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.38■■□□□ 1.49
TPM1P09493 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.38■■□□□ 1.49
TPM1P09493 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TPM1P09493 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TPM1P09493 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TPM1P09493 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
TPM1P09493 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
TPM1P09493 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.37■■□□□ 1.49
TPM1P09493 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.37■■□□□ 1.49
TPM1P09493 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
TPM1P09493 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
TPM1P09493 AC007375.3-201ENST00000600936 2314 ntBASIC24.36■■□□□ 1.49
TPM1P09493 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
TPM1P09493 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
TPM1P09493 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TPM1P09493 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
TPM1P09493 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.36■■□□□ 1.49
TPM1P09493 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.36■■□□□ 1.49
TPM1P09493 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.36■■□□□ 1.49
TPM1P09493 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
TPM1P09493 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.36■■□□□ 1.49
TPM1P09493 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.36■■□□□ 1.49
TPM1P09493 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
TPM1P09493 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.35■■□□□ 1.49
TPM1P09493 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TPM1P09493 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.35■■□□□ 1.49
TPM1P09493 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.35■■□□□ 1.49
TPM1P09493 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.35■■□□□ 1.49
TPM1P09493 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TPM1P09493 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.35■■□□□ 1.49
TPM1P09493 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
TPM1P09493 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC24.35■■□□□ 1.49
TPM1P09493 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TPM1P09493 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.34■■□□□ 1.49
TPM1P09493 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.34■■□□□ 1.49
TPM1P09493 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
TPM1P09493 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TPM1P09493 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 AL353803.4-201ENST00000565882 1934 ntBASIC24.33■■□□□ 1.49
TPM1P09493 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC24.33■■□□□ 1.49
TPM1P09493 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 AC120024.1-201ENST00000562672 995 ntBASIC24.33■■□□□ 1.49
TPM1P09493 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TPM1P09493 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.48
TPM1P09493 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.32■■□□□ 1.48
TPM1P09493 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TPM1P09493 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TPM1P09493 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
TPM1P09493 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TPM1P09493 KRT18P60-201ENST00000312876 1297 ntBASIC24.32■■□□□ 1.48
TPM1P09493 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.32■■□□□ 1.48
TPM1P09493 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TPM1P09493 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TPM1P09493 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.32■■□□□ 1.48
TPM1P09493 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TPM1P09493 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms