Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.69■□□□□ 0.26
HLA-DQA1P01909 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC16.68■□□□□ 0.26
HLA-DQA1P01909 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DQA1P01909 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HLA-DQA1P01909 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HLA-DQA1P01909 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HLA-DQA1P01909 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQA1P01909 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 METRNL-202ENST00000570778 967 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQA1P01909 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms