Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.44■■□□□ 1.02
CACNA1AO00555 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.44■■□□□ 1.02
CACNA1AO00555 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CACNA1AO00555 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
CACNA1AO00555 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
CACNA1AO00555 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CACNA1AO00555 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.44■■□□□ 1.02
CACNA1AO00555 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1AO00555 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.44■■□□□ 1.02
CACNA1AO00555 AC010525.1-201ENST00000585559 441 ntBASIC21.44■■□□□ 1.02
CACNA1AO00555 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CACNA1AO00555 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.44■■□□□ 1.02
CACNA1AO00555 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
CACNA1AO00555 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.44■■□□□ 1.02
CACNA1AO00555 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1AO00555 OR2I1P-207ENST00000453522 948 ntBASIC21.44■■□□□ 1.02
CACNA1AO00555 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.44■■□□□ 1.02
CACNA1AO00555 MIR4758-201ENST00000577688 71 ntBASIC21.44■■□□□ 1.02
CACNA1AO00555 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.44■■□□□ 1.02
CACNA1AO00555 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1AO00555 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1AO00555 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1AO00555 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1AO00555 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.43■■□□□ 1.02
CACNA1AO00555 AC083880.1-201ENST00000608266 535 ntBASIC21.43■■□□□ 1.02
CACNA1AO00555 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.43■■□□□ 1.02
CACNA1AO00555 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1AO00555 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1AO00555 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.43■■□□□ 1.02
CACNA1AO00555 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.43■■□□□ 1.02
CACNA1AO00555 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1AO00555 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.42■■□□□ 1.02
CACNA1AO00555 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1AO00555 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.42■■□□□ 1.02
CACNA1AO00555 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1AO00555 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CACNA1AO00555 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1AO00555 LINC01003-201ENST00000564834 1764 ntBASIC21.42■■□□□ 1.02
CACNA1AO00555 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.42■■□□□ 1.02
CACNA1AO00555 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1AO00555 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.42■■□□□ 1.02
CACNA1AO00555 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.42■■□□□ 1.02
CACNA1AO00555 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1AO00555 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1AO00555 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1AO00555 AC133637.1-201ENST00000624115 1537 ntBASIC21.41■■□□□ 1.02
CACNA1AO00555 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1AO00555 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CACNA1AO00555 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CACNA1AO00555 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1AO00555 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1AO00555 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1AO00555 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CACNA1AO00555 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CACNA1AO00555 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.4■■□□□ 1.02
CACNA1AO00555 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.4■■□□□ 1.02
CACNA1AO00555 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1AO00555 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1AO00555 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1AO00555 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CACNA1AO00555 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.39■■□□□ 1.02
CACNA1AO00555 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CACNA1AO00555 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.39■■□□□ 1.02
CACNA1AO00555 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.39■■□□□ 1.02
CACNA1AO00555 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.39■■□□□ 1.02
CACNA1AO00555 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.39■■□□□ 1.02
CACNA1AO00555 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.02
CACNA1AO00555 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.39■■□□□ 1.02
CACNA1AO00555 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.39■■□□□ 1.02
CACNA1AO00555 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CACNA1AO00555 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CACNA1AO00555 AC105036.2-201ENST00000569468 176 ntBASIC21.38■■□□□ 1.01
CACNA1AO00555 MIR4497-201ENST00000583208 89 ntBASIC21.38■■□□□ 1.01
CACNA1AO00555 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.38■■□□□ 1.01
CACNA1AO00555 AC141586.4-201ENST00000624558 1573 ntBASIC21.38■■□□□ 1.01
CACNA1AO00555 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.38■■□□□ 1.01
CACNA1AO00555 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.38■■□□□ 1.01
CACNA1AO00555 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CACNA1AO00555 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.38■■□□□ 1.01
CACNA1AO00555 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CACNA1AO00555 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CACNA1AO00555 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CACNA1AO00555 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CACNA1AO00555 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CACNA1AO00555 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.37■■□□□ 1.01
CACNA1AO00555 UBE2DNL-204ENST00000602536 740 ntBASIC21.37■■□□□ 1.01
CACNA1AO00555 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.37■■□□□ 1.01
CACNA1AO00555 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CACNA1AO00555 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CACNA1AO00555 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CACNA1AO00555 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CACNA1AO00555 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.37■■□□□ 1.01
CACNA1AO00555 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CACNA1AO00555 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CACNA1AO00555 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.36■■□□□ 1.01
CACNA1AO00555 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.36■■□□□ 1.01
CACNA1AO00555 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.36■■□□□ 1.01
CACNA1AO00555 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CACNA1AO00555 BX005040.4-201ENST00000637145 1518 ntBASIC21.36■■□□□ 1.01
CACNA1AO00555 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms