Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.71■□□□□ 0.75
MBD3L4A6NDZ8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MBD3L4A6NDZ8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MBD3L4A6NDZ8 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD3L4A6NDZ8 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 YBX1P1-201ENST00000445822 960 ntBASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
MBD3L4A6NDZ8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 AC027612.3-201ENST00000413684 1047 ntBASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 AL162430.1-201ENST00000480705 870 ntBASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 AC012414.1-201ENST00000556676 535 ntBASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 AL354811.1-201ENST00000610286 706 ntBASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD3L4A6NDZ8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 ABCB10P4-201ENST00000566803 2184 ntBASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD3L4A6NDZ8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MBD3L4A6NDZ8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MBD3L4A6NDZ8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MBD3L4A6NDZ8 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 AC123595.1-201ENST00000440769 1046 ntBASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 AC034268.1-201ENST00000441047 882 ntBASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MBD3L4A6NDZ8 AL353803.4-201ENST00000565882 1934 ntBASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.63■□□□□ 0.73
MBD3L4A6NDZ8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms