Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AL160287.1-203ENST00000637960 1061 ntBASIC20.83■□□□□ 0.93
VPS8Q8N3P4 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 APP-205ENST00000358918 2366 ntTSL 5 BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 GUCY1B3-207ENST00000513437 2355 ntTSL 2 BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 DGCR9-201ENST00000609630 2415 ntBASIC20.83■□□□□ 0.92
VPS8Q8N3P4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 LINGO1-AS1-201ENST00000558691 1720 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS8Q8N3P4 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 VRK3-205ENST00000593919 1979 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 STPG4-201ENST00000294947 1621 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AL356653.1-201ENST00000402743 360 ntBASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AC234582.2-201ENST00000455788 568 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS8Q8N3P4 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 CXorf40B-203ENST00000370406 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 AGGF1P10-201ENST00000635005 2191 ntBASIC20.81■□□□□ 0.92
VPS8Q8N3P4 SERPINB8-209ENST00000636430 1719 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 AIG1-203ENST00000367596 559 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 RBP4-203ENST00000371469 814 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 RPSAP70-201ENST00000504462 864 ntBASIC20.81■□□□□ 0.92
VPS8Q8N3P4 AC023051.2-201ENST00000541141 460 ntBASIC20.81■□□□□ 0.92
VPS8Q8N3P4 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 MIR4763-201ENST00000581461 92 ntBASIC20.81■□□□□ 0.92
VPS8Q8N3P4 CLPP-205ENST00000596605 646 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 GHET1-201ENST00000627071 1906 ntBASIC20.81■□□□□ 0.92
VPS8Q8N3P4 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS8Q8N3P4 CICP4-201ENST00000447359 2812 ntBASIC20.8■□□□□ 0.92
VPS8Q8N3P4 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 AC027612.2-202ENST00000445955 1199 ntBASIC20.8■□□□□ 0.92
VPS8Q8N3P4 AL669831.4-201ENST00000447500 872 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 BCRP4-201ENST00000506079 804 ntBASIC20.8■□□□□ 0.92
VPS8Q8N3P4 AP001102.1-201ENST00000528959 409 ntBASIC20.8■□□□□ 0.92
VPS8Q8N3P4 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS8Q8N3P4 NAV1-210ENST00000593583 726 ntBASIC20.8■□□□□ 0.92
VPS8Q8N3P4 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms