Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HMGB1P09429 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB1P09429 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HMGB1P09429 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB1P09429 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGB1P09429 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
HMGB1P09429 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGB1P09429 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGB1P09429 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.1■□□□□ 0.17
HMGB1P09429 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 AC140113.1-201ENST00000603467 169 ntBASIC16.1■□□□□ 0.17
HMGB1P09429 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB1P09429 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGB1P09429 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 KRT8P42-201ENST00000405771 1399 ntBASIC16.1■□□□□ 0.17
HMGB1P09429 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
HMGB1P09429 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HMGB1P09429 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB1P09429 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGB1P09429 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB1P09429 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HMGB1P09429 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HMGB1P09429 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
HMGB1P09429 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 AP000356.3-201ENST00000382243 753 ntBASIC16.09■□□□□ 0.17
HMGB1P09429 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
HMGB1P09429 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 RN7SKP109-201ENST00000410592 316 ntBASIC16.09■□□□□ 0.17
HMGB1P09429 SSR4P1-201ENST00000415143 412 ntBASIC16.09■□□□□ 0.17
HMGB1P09429 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HMGB1P09429 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGB1P09429 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGB1P09429 RNA5SP417-201ENST00000516459 108 ntBASIC16.09■□□□□ 0.17
HMGB1P09429 LMO1-204ENST00000534484 770 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
HMGB1P09429 RN7SL371P-201ENST00000578099 267 ntBASIC16.09■□□□□ 0.17
HMGB1P09429 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 INHBC-201ENST00000309668 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 C2-209ENST00000452323 1999 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB1P09429 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB1P09429 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
HMGB1P09429 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 SLC3A1-205ENST00000409387 2334 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms