Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC078875.1-201ENST00000431907 724 ntBASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AC106794.1-201ENST00000506935 792 ntBASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AC116345.2-201ENST00000512837 523 ntBASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AC132938.2-201ENST00000579188 680 ntBASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AC027307.3-201ENST00000594262 1100 ntBASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC28BQ9BUN5 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 HYLS1-202ENST00000425380 2061 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.27
CCDC28BQ9BUN5 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 USO1-201ENST00000264904 4135 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 GADL1-201ENST00000282538 3759 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PKP4P1-201ENST00000426801 2158 ntBASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 TSPY25P-201ENST00000429463 745 ntBASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AC005722.1-201ENST00000431878 964 ntBASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AC025048.6-201ENST00000634326 1161 ntBASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 DNAH2-202ENST00000570791 2994 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 CHIAP2-201ENST00000369743 2829 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 UNC93A-201ENST00000230256 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 AC022497.1-201ENST00000624916 3691 ntBASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 CYP4F11-205ENST00000620614 2908 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC28BQ9BUN5 FSTL1-202ENST00000424703 1396 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 AL449403.1-201ENST00000432783 1577 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ZNF148-205ENST00000484491 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 REPS1-205ENST00000415951 2424 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC28BQ9BUN5 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms