Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 NHP2-201ENST00000274606 865 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 PRKCE-202ENST00000394874 996 ntTSL 3 BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 ZNF662-202ENST00000422021 436 ntTSL 2 BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 AC020893.2-201ENST00000506083 723 ntBASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 CASC4P1-201ENST00000456608 1312 ntBASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 AC139491.6-202ENST00000637171 2077 ntBASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
VPS13DQ5THJ4 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 OLFML3-201ENST00000320334 1780 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 SMIM21-201ENST00000382638 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 TRAV38-2DV8-201ENST00000390465 395 ntAPPRIS P1 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 AC010240.1-201ENST00000429606 459 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 AC098934.2-202ENST00000438944 1033 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 MIR1587-201ENST00000583319 53 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 RPSAP67-201ENST00000584105 862 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 AC025682.1-203ENST00000584391 442 ntTSL 2 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 ALG8-201ENST00000299626 1675 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 C16orf46-202ENST00000378611 1857 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 CHMP2A-201ENST00000312547 913 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 OBP2A-202ENST00000342114 607 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 RNA5SP248-201ENST00000365602 127 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 C1orf158-201ENST00000376210 695 ntTSL 3 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 HNRNPA1P33-201ENST00000421426 561 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 AL049792.1-201ENST00000424708 1262 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 AL121761.1-203ENST00000426012 677 ntTSL 3 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 RN7SL148P-201ENST00000467120 279 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 CHMP2A-206ENST00000600118 1178 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 AP000892.2-201ENST00000613535 324 ntBASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 MECP2-226ENST00000640414 897 ntTSL 5 BASIC8.71□□□□□ -1.01
VPS13DQ5THJ4 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 AL807752.1-201ENST00000395082 1322 ntBASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 NFATC4-212ENST00000554473 1382 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 JAML-211ENST00000533261 1508 ntTSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 AC018511.1-201ENST00000436608 380 ntTSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 FGL1-206ENST00000518650 1093 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 AC092471.1-202ENST00000637160 999 ntBASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 PLXNA4-203ENST00000378539 2004 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 ENO3-201ENST00000323997 1521 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 AP000229.1-201ENST00000608591 1979 ntTSL 4 BASIC8.71□□□□□ -1.02
VPS13DQ5THJ4 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 PFN1P3-201ENST00000443612 402 ntBASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 PFN1P4-201ENST00000450970 402 ntBASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 IQCJ-202ENST00000451172 885 ntAPPRIS P4 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 SLC25A5P6-201ENST00000515328 886 ntBASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 AC136475.6-201ENST00000533113 289 ntBASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 ZG16B-204ENST00000572863 716 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 AC013472.3-201ENST00000607407 659 ntBASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 PADI6-201ENST00000619609 2396 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 ALDH3B2-204ENST00000530069 2480 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 PES1P1-201ENST00000508165 1736 ntBASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
VPS13DQ5THJ4 PARK7-204ENST00000377493 795 ntTSL 2 BASIC8.7□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms