Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 SYT17-208ENST00000568433 812 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 RN7SL713P-201ENST00000582127 302 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MIR4649-201ENST00000582839 64 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 FTLP5-201ENST00000586853 534 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ECM1P1-201ENST00000604092 1279 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AL358472.3-201ENST00000608147 415 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 SHMT1P1-201ENST00000419974 1312 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 STK3-218ENST00000617590 2485 ntTSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ZKSCAN3-203ENST00000377255 4799 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AC007952.5-201ENST00000572818 1486 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PHB-210ENST00000511832 1509 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 CMC1-204ENST00000423894 549 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 DDX39AP1-201ENST00000445147 1181 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AC116345.2-201ENST00000512837 523 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AP002803.1-201ENST00000528836 498 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AL512310.5-201ENST00000551999 515 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AC013355.1-201ENST00000562625 723 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 C2orf69P1-201ENST00000563532 1093 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AL031713.1-201ENST00000564813 661 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 MIR4683-201ENST00000579659 81 ntBASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 COL11A1-210ENST00000512756 5442 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 L1CAM-202ENST00000361981 5004 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 IL21R-201ENST00000337929 4849 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 EXOC5-202ENST00000413566 8513 ntTSL 5 BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PDLIM3Q53GG5 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms