Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 BX088651.3-201ENST00000418155 352 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 HNRNPA1P2-207ENST00000432375 960 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 TREX1-203ENST00000456089 629 ntTSL 3 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RN7SL128P-201ENST00000467883 305 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC025594.1-201ENST00000469533 543 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RN7SL578P-201ENST00000477781 283 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC025186.1-201ENST00000478174 870 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC092910.2-201ENST00000491262 348 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC087203.1-201ENST00000532111 1181 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC145285.5-201ENST00000562217 361 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC079414.2-201ENST00000567157 1104 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RN7SL440P-201ENST00000577855 343 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AP006248.1-201ENST00000610471 67 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC005865.2-202ENST00000635814 725 ntBASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL28A1Q2UY09 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 CFL1P6-201ENST00000400899 494 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AC006328.1-201ENST00000437571 379 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms