Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
GFRA1P56159 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.22□□□□□ -0.45
GFRA1P56159 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 AC004623.1-201ENST00000624592 2127 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 CICP20-201ENST00000443330 2801 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A21P-201ENST00000510875 1396 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A15P-201ENST00000514465 1395 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A6P-201ENST00000515148 1394 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A16P-201ENST00000526662 1395 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A9P-201ENST00000527940 1395 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A5P-201ENST00000528738 1395 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A14P-201ENST00000530386 1395 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 FAM90A13P-201ENST00000534703 1395 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 APOBEC3H-201ENST00000348946 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 SERF2-204ENST00000402131 586 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 SNORD23-201ENST00000408876 110 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
GFRA1P56159 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC12.22□□□□□ -0.45
GFRA1P56159 AL355334.1-201ENST00000417713 215 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 AC092810.2-201ENST00000431570 362 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 PSMD4P1-201ENST00000433951 1109 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC12.22□□□□□ -0.45
GFRA1P56159 AC092903.1-201ENST00000466506 262 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 AC024293.1-201ENST00000467930 498 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 RPL29P2-202ENST00000498671 657 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC12.22□□□□□ -0.45
GFRA1P56159 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC12.22□□□□□ -0.45
GFRA1P56159 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 RN7SL134P-201ENST00000579756 303 ntBASIC12.22□□□□□ -0.45
GFRA1P56159 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC12.22□□□□□ -0.45
GFRA1P56159 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 ESR1-214ENST00000638569 132 ntTSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
GFRA1P56159 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
GFRA1P56159 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
GFRA1P56159 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.21□□□□□ -0.45
GFRA1P56159 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC12.21□□□□□ -0.45
GFRA1P56159 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.21□□□□□ -0.45
GFRA1P56159 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.21□□□□□ -0.45
GFRA1P56159 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC12.21□□□□□ -0.45
GFRA1P56159 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
GFRA1P56159 RNA5SP491-201ENST00000362936 118 ntBASIC12.21□□□□□ -0.45
GFRA1P56159 CFL1P6-201ENST00000400899 494 ntBASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms