Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MTUS2-206ENST00000612955 7430 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MYO1C-201ENST00000359786 5145 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 TISP43-201ENST00000409793 538 ntTSL 4 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC010141.1-201ENST00000411585 623 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AP003171.2-201ENST00000528208 925 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 NEU3-205ENST00000531619 582 ntTSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC012158.2-201ENST00000536546 354 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC020922.3-201ENST00000595064 547 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PCDHB18P-202ENST00000526308 3197 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 GOLGA8EP-201ENST00000530246 1959 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PCDHGB1-201ENST00000523390 4590 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 LRRC57-201ENST00000323443 7351 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC024075.2-201ENST00000598112 1473 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AL928654.5-201ENST00000624831 2501 ntBASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PCNX4-202ENST00000391611 4073 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PRICKLE1-216ENST00000640132 4278 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 DLGAP2-214ENST00000612087 10088 ntAPPRIS P2 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 DDC-214ENST00000622873 1839 ntTSL 3 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ZNF75D-202ENST00000370766 5592 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 PIN4P1-201ENST00000451079 396 ntBASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 IGHV3-37-201ENST00000518544 340 ntBASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC11.54□□□□□ -0.56
PDLIM3Q53GG5 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms