Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 RPL30-201ENST00000287038 543 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 MEG8-205ENST00000442197 625 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A3P12111 LINC00877-202ENST00000464271 552 ntTSL 4 BASIC13.56□□□□□ -0.24
COL6A3P12111 MIR4327-201ENST00000581194 85 ntBASIC13.56□□□□□ -0.24
COL6A3P12111 LINC01651-201ENST00000624642 350 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
COL6A3P12111 Z98259.1-201ENST00000564261 1697 ntBASIC13.56□□□□□ -0.24
COL6A3P12111 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL6A3P12111 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 AL355802.1-201ENST00000417591 990 ntTSL 3 BASIC13.56□□□□□ -0.24
COL6A3P12111 AL450304.1-201ENST00000418657 759 ntBASIC13.56□□□□□ -0.24
COL6A3P12111 ZFYVE9P2-201ENST00000447321 604 ntBASIC13.56□□□□□ -0.24
COL6A3P12111 AC073188.5-201ENST00000451103 673 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A3P12111 KRT18P63-201ENST00000505463 979 ntBASIC13.56□□□□□ -0.24
COL6A3P12111 AC026464.4-201ENST00000570054 1284 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 IGLV2-8-201ENST00000620395 517 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL6A3P12111 AC006974.2-201ENST00000637240 1227 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A3P12111 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A3P12111 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 AL359183.1-201ENST00000623796 2132 ntBASIC13.56□□□□□ -0.24
COL6A3P12111 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A3P12111 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 AL606760.3-201ENST00000569869 3591 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 AL590428.1-201ENST00000428865 1973 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 GZMH-202ENST00000382548 687 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 AL031770.1-201ENST00000430842 851 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 KRTAP4-16-201ENST00000440582 708 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL6A3P12111 DLEU1-219ENST00000476738 838 ntTSL 5 BASIC13.55□□□□□ -0.24
COL6A3P12111 ATP6V0CP1-201ENST00000482495 618 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 MRPS28-208ENST00000521605 437 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 ACRBP-204ENST00000536350 1053 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 AC073610.2-201ENST00000537495 406 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL6A3P12111 AC145207.7-201ENST00000580125 958 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 AC003101.3-201ENST00000624452 768 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 AC109635.4-201ENST00000636653 1005 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 GIMAP4-202ENST00000461940 1569 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 SARS2-205ENST00000594171 1631 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL6A3P12111 MYF5-201ENST00000228644 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 AC004471.2-201ENST00000609936 1514 ntTSL 3 BASIC13.55□□□□□ -0.24
COL6A3P12111 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 MOG-217ENST00000376891 889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 MOG-219ENST00000376898 1027 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 MOG-222ENST00000396701 910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 MOG-223ENST00000396704 675 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
COL6A3P12111 GSTK1-205ENST00000443571 850 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 AC020899.1-201ENST00000492855 602 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 MOG-233ENST00000494692 958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 AC139713.1-201ENST00000515019 321 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 AC012574.1-201ENST00000523874 252 ntTSL 5 BASIC13.55□□□□□ -0.24
COL6A3P12111 TRAPPC4-209ENST00000528230 583 ntTSL 3 BASIC13.55□□□□□ -0.24
COL6A3P12111 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL6A3P12111 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 KRTAP4-2-201ENST00000377726 763 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL6A3P12111 DEFA1-202ENST00000382692 485 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A3P12111 RN7SKP218-201ENST00000410222 292 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 IP6K2-208ENST00000417896 1124 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 LINC02521-201ENST00000440848 834 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A3P12111 PIGCP1-201ENST00000527583 895 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 RN7SL336P-201ENST00000580171 297 ntBASIC13.55□□□□□ -0.24
COL6A3P12111 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A3P12111 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 NFATC4-212ENST00000554473 1382 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 AC002550.1-201ENST00000565916 1379 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A3P12111 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
COL6A3P12111 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A3P12111 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms