Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 STX3-207ENST00000633708 3111 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 MARK2P9-201ENST00000430958 1727 ntBASIC16.05■□□□□ 0.16
HLA-DOAP06340 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 PGAM1P11-201ENST00000416729 680 ntBASIC16.04■□□□□ 0.16
HLA-DOAP06340 HNRNPA1P21-201ENST00000424115 961 ntBASIC16.04■□□□□ 0.16
HLA-DOAP06340 AL136084.1-201ENST00000449172 318 ntBASIC16.04■□□□□ 0.16
HLA-DOAP06340 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.04■□□□□ 0.16
HLA-DOAP06340 ZNF493-208ENST00000599461 1769 ntBASIC16.04■□□□□ 0.16
HLA-DOAP06340 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AC072061.1-201ENST00000569710 2234 ntBASIC16.04■□□□□ 0.16
HLA-DOAP06340 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DOAP06340 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DOAP06340 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AL928921.2-201ENST00000641325 2442 ntBASIC16.03■□□□□ 0.16
HLA-DOAP06340 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AC133141.1-201ENST00000443015 339 ntBASIC16.03■□□□□ 0.16
HLA-DOAP06340 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AP000920.1-201ENST00000531824 344 ntBASIC16.03■□□□□ 0.16
HLA-DOAP06340 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 LINC00638-201ENST00000555578 2518 ntBASIC16.03■□□□□ 0.16
HLA-DOAP06340 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DOAP06340 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms