Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 Z98885.3-201ENST00000624882 1757 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 CAMKK2-205ENST00000392474 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 AP002353.1-201ENST00000528257 1599 ntBASIC11.75□□□□□ -0.53
SDCBPO00560 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
SDCBPO00560 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
SDCBPO00560 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
SDCBPO00560 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC11.75□□□□□ -0.53
SDCBPO00560 POM121L10P-201ENST00000436994 1285 ntBASIC11.75□□□□□ -0.53
SDCBPO00560 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC11.75□□□□□ -0.53
SDCBPO00560 HLA-J-204ENST00000495278 958 ntBASIC11.75□□□□□ -0.53
SDCBPO00560 FADS2-212ENST00000522639 360 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC11.75□□□□□ -0.53
SDCBPO00560 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC11.75□□□□□ -0.53
SDCBPO00560 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC11.75□□□□□ -0.53
SDCBPO00560 EID1-202ENST00000560490 584 ntTSL 3 BASIC11.75□□□□□ -0.53
SDCBPO00560 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 FADS2-215ENST00000574708 385 ntTSL 3 BASIC11.75□□□□□ -0.53
SDCBPO00560 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC11.75□□□□□ -0.53
SDCBPO00560 AC239800.4-201ENST00000603712 296 ntBASIC11.75□□□□□ -0.53
SDCBPO00560 AC004923.1-202ENST00000642106 209 ntBASIC11.75□□□□□ -0.53
SDCBPO00560 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 RAN-210ENST00000541630 1475 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC11.75□□□□□ -0.53
SDCBPO00560 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
SDCBPO00560 PAM-203ENST00000346918 3302 ntTSL 5 BASIC11.75□□□□□ -0.53
SDCBPO00560 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC11.75□□□□□ -0.53
SDCBPO00560 CES1P1-201ENST00000421606 1704 ntBASIC11.74□□□□□ -0.53
SDCBPO00560 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC11.74□□□□□ -0.53
SDCBPO00560 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
SDCBPO00560 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
SDCBPO00560 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
SDCBPO00560 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
SDCBPO00560 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 AC092028.1-202ENST00000641483 3547 ntBASIC11.74□□□□□ -0.53
SDCBPO00560 AC092028.1-201ENST00000641781 3540 ntBASIC11.74□□□□□ -0.53
SDCBPO00560 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms