Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC244197.2-201ENST00000370438 655 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 IGHV1-45-201ENST00000390621 411 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 SLC25A6P1-201ENST00000412123 775 ntBASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 AC142391.1-201ENST00000515823 1002 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 AC034102.3-201ENST00000551846 300 ntTSL 3 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 IGHV1OR16-3-201ENST00000568138 205 ntBASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 AC010976.1-201ENST00000631170 734 ntTSL 5 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 ALX1-201ENST00000316824 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 ATAT1-204ENST00000330083 1728 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 SFTPA1-203ENST00000428376 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHANK3Q9BYB0 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 NPL-205ENST00000367555 1536 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 CST11-202ENST00000377009 554 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 CNMD-201ENST00000377962 1410 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 ZNF662-202ENST00000422021 436 ntTSL 2 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AC100774.1-201ENST00000565581 1603 ntBASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 TMEM106A-204ENST00000588659 1437 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AC091941.1-201ENST00000623003 576 ntBASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AL139424.2-202ENST00000641335 1369 ntBASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AL139823.1-201ENST00000641871 1225 ntBASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 AC004623.1-201ENST00000624592 2127 ntBASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 MPPE1-204ENST00000344987 1831 ntTSL 5 BASIC16.96■□□□□ 0.31
SHANK3Q9BYB0 OR6M1-201ENST00000309154 1053 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 RPS6-201ENST00000315377 863 ntTSL 3 BASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 KRT18P39-201ENST00000415349 1299 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 IL6RP1-201ENST00000417848 1273 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 RN7SL340P-201ENST00000470792 296 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 AP003170.2-201ENST00000544730 786 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 RN7SL827P-201ENST00000607480 288 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 AC087893.1-201ENST00000612818 664 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 AL731555.1-201ENST00000634547 1259 ntBASIC16.96■□□□□ 0.3
SHANK3Q9BYB0 PLXNA4-203ENST00000378539 2004 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 DDX12P-201ENST00000432996 2947 ntBASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 AC073585.1-201ENST00000368895 1328 ntBASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 GJB1-202ENST00000374022 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 MBL3P-201ENST00000402234 644 ntBASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 ATP5G1P7-201ENST00000444398 400 ntBASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 AC046143.1-201ENST00000447139 972 ntTSL 2 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 OR2A15P-201ENST00000463814 900 ntBASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 SLC10A7-208ENST00000511374 869 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 AC011603.2-201ENST00000548149 675 ntTSL 3 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 AC104423.1-201ENST00000591742 728 ntTSL 3 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 MED25-209ENST00000612791 881 ntTSL 5 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 RBP1-206ENST00000617459 667 ntTSL 2 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 MEG3-214ENST00000519709 1726 ntTSL 5 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHANK3Q9BYB0 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 UGT1A1-201ENST00000305208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 C16orf46-202ENST00000378611 1857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 GPHN-202ENST00000459628 1723 ntTSL 2 BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 PRY-201ENST00000303728 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHANK3Q9BYB0 PRY2-201ENST00000303804 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms