Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 OR8T1P-201ENST00000421347 918 ntBASIC13.31□□□□□ -0.28
COL28A1Q2UY09 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 RN7SL375P-201ENST00000492442 298 ntBASIC13.31□□□□□ -0.28
COL28A1Q2UY09 RN7SL767P-201ENST00000493013 295 ntBASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 IGHV1-12-201ENST00000518307 205 ntBASIC13.31□□□□□ -0.28
COL28A1Q2UY09 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 MST1P2-201ENST00000457982 2291 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC004801.1-201ENST00000549557 360 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 KRT8P2-201ENST00000556193 944 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC120498.5-201ENST00000561757 299 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC120498.7-201ENST00000562876 330 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC005586.2-201ENST00000563946 837 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 EEF1DP7-201ENST00000580496 513 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 TYMSP2-201ENST00000589501 424 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC006986.1-201ENST00000612764 241 ntBASIC13.3□□□□□ -0.28
COL28A1Q2UY09 RARS-210ENST00000626454 177 ntTSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
COL28A1Q2UY09 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms