Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 KRT18P5-201ENST00000436075 1291 ntBASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NOTCH3Q9UM47 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 PKD1P6-201ENST00000343738 4769 ntBASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 AC027612.3-201ENST00000413684 1047 ntBASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.09■□□□□ 0.33
NOTCH3Q9UM47 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NOTCH3Q9UM47 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.08■□□□□ 0.33
NOTCH3Q9UM47 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.08■□□□□ 0.33
NOTCH3Q9UM47 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.08■□□□□ 0.33
NOTCH3Q9UM47 TERF1P2-201ENST00000583350 1212 ntBASIC17.08■□□□□ 0.33
NOTCH3Q9UM47 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.08■□□□□ 0.33
NOTCH3Q9UM47 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.08■□□□□ 0.32
NOTCH3Q9UM47 AC020928.2-201ENST00000588717 2197 ntBASIC17.08■□□□□ 0.32
NOTCH3Q9UM47 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
NOTCH3Q9UM47 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NOTCH3Q9UM47 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NOTCH3Q9UM47 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NOTCH3Q9UM47 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 AC012414.1-201ENST00000556676 535 ntBASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 pRNA.6-201ENST00000610482 90 ntBASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 pRNA.5-201ENST00000612139 90 ntBASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 pRNA.11-201ENST00000618423 90 ntBASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 pRNA.13-201ENST00000619112 90 ntBASIC17.07■□□□□ 0.32
NOTCH3Q9UM47 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 CCDC92B-201ENST00000575506 885 ntBASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NOTCH3Q9UM47 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 AL137784.2-201ENST00000607332 1000 ntBASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 DUSP8P4-201ENST00000399538 1761 ntBASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NOTCH3Q9UM47 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 AC009086.3-201ENST00000623486 1008 ntBASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 KRT18P14-201ENST00000534205 1250 ntBASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.04■□□□□ 0.32
NOTCH3Q9UM47 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms