Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
BRF2Q9HAW0 ESRRAP2-201ENST00000418437 1549 ntBASIC21.35■■□□□ 1.01
BRF2Q9HAW0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF2Q9HAW0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.35■■□□□ 1.01
BRF2Q9HAW0 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 AC009102.2-201ENST00000606772 1639 ntBASIC21.34■■□□□ 1.01
BRF2Q9HAW0 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.34■■□□□ 1.01
BRF2Q9HAW0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.33■■□□□ 1.01
BRF2Q9HAW0 DUX4L4-201ENST00000566884 1269 ntBASIC21.33■■□□□ 1.01
BRF2Q9HAW0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
BRF2Q9HAW0 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.33■■□□□ 1
BRF2Q9HAW0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.33■■□□□ 1
BRF2Q9HAW0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
BRF2Q9HAW0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
BRF2Q9HAW0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
BRF2Q9HAW0 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.33■■□□□ 1
BRF2Q9HAW0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.32■■□□□ 1
BRF2Q9HAW0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.32■■□□□ 1
BRF2Q9HAW0 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 AC079834.2-201ENST00000609776 1949 ntBASIC21.32■■□□□ 1
BRF2Q9HAW0 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.32■■□□□ 1
BRF2Q9HAW0 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.32■■□□□ 1
BRF2Q9HAW0 MIR6724-1-201ENST00000616420 92 ntBASIC21.32■■□□□ 1
BRF2Q9HAW0 MIR6724-2-201ENST00000616483 92 ntBASIC21.32■■□□□ 1
BRF2Q9HAW0 MIR6724-4-201ENST00000617390 92 ntBASIC21.32■■□□□ 1
BRF2Q9HAW0 MIR6724-3-201ENST00000622482 92 ntBASIC21.32■■□□□ 1
BRF2Q9HAW0 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.32■■□□□ 1
BRF2Q9HAW0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.32■■□□□ 1
BRF2Q9HAW0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRF2Q9HAW0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.31■■□□□ 1
BRF2Q9HAW0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.31■■□□□ 1
BRF2Q9HAW0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.31■■□□□ 1
BRF2Q9HAW0 UNC93B8-201ENST00000511903 705 ntBASIC21.31■■□□□ 1
BRF2Q9HAW0 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
BRF2Q9HAW0 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRF2Q9HAW0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
BRF2Q9HAW0 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.3■■□□□ 1
BRF2Q9HAW0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRF2Q9HAW0 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
BRF2Q9HAW0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.3■■□□□ 1
BRF2Q9HAW0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.3■■□□□ 1
BRF2Q9HAW0 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRF2Q9HAW0 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.3■■□□□ 1
BRF2Q9HAW0 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRF2Q9HAW0 AL035685.1-201ENST00000636663 812 ntBASIC21.3■■□□□ 1
BRF2Q9HAW0 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRF2Q9HAW0 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.3■■□□□ 1
BRF2Q9HAW0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRF2Q9HAW0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.29■■□□□ 1
BRF2Q9HAW0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
BRF2Q9HAW0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
BRF2Q9HAW0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
BRF2Q9HAW0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRF2Q9HAW0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.29■■□□□ 1
BRF2Q9HAW0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
BRF2Q9HAW0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.29■■□□□ 1
BRF2Q9HAW0 C17orf82-201ENST00000623772 1530 ntBASIC21.29■■□□□ 1
BRF2Q9HAW0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRF2Q9HAW0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
BRF2Q9HAW0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
BRF2Q9HAW0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms