Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC28BQ9BUN5 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 AC092053.2-201ENST00000640557 1818 ntBASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC28BQ9BUN5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC28BQ9BUN5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC28BQ9BUN5 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC28BQ9BUN5 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC28BQ9BUN5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC28BQ9BUN5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC28BQ9BUN5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC28BQ9BUN5 C11orf96-202ENST00000528572 1834 ntBASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC28BQ9BUN5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC28BQ9BUN5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC28BQ9BUN5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC28BQ9BUN5 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC28BQ9BUN5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC28BQ9BUN5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC28BQ9BUN5 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC28BQ9BUN5 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
CCDC28BQ9BUN5 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
CCDC28BQ9BUN5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CCDC28BQ9BUN5 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 AC022616.5-201ENST00000518796 181 ntBASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 AL353803.4-201ENST00000565882 1934 ntBASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.05
CCDC28BQ9BUN5 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
CCDC28BQ9BUN5 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC28BQ9BUN5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC28BQ9BUN5 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CCDC28BQ9BUN5 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC28BQ9BUN5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC28BQ9BUN5 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CCDC28BQ9BUN5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC28BQ9BUN5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC28BQ9BUN5 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.6■■□□□ 1.05
CCDC28BQ9BUN5 AC019171.1-201ENST00000601251 1056 ntBASIC21.6■■□□□ 1.05
CCDC28BQ9BUN5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC28BQ9BUN5 AL137060.1-201ENST00000618151 2648 ntBASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms