Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS13CQ709C8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS13CQ709C8 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS13CQ709C8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS13CQ709C8 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS13CQ709C8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS13CQ709C8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 AP005435.1-201ENST00000529293 1178 ntBASIC18.82■□□□□ 0.6
VPS13CQ709C8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13CQ709C8 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS13CQ709C8 MIR572-201ENST00000384983 95 ntBASIC18.81■□□□□ 0.6
VPS13CQ709C8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS13CQ709C8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS13CQ709C8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13CQ709C8 AC016769.1-201ENST00000409132 1010 ntBASIC18.81■□□□□ 0.6
VPS13CQ709C8 AC022211.4-201ENST00000625094 2161 ntBASIC18.81■□□□□ 0.6
VPS13CQ709C8 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13CQ709C8 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13CQ709C8 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS13CQ709C8 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13CQ709C8 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 AC091060.1-201ENST00000623524 1766 ntBASIC18.8■□□□□ 0.6
VPS13CQ709C8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.8■□□□□ 0.6
VPS13CQ709C8 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS13CQ709C8 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13CQ709C8 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 NCF1B-203ENST00000435988 1254 ntBASIC18.79■□□□□ 0.6
VPS13CQ709C8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13CQ709C8 AL355802.2-201ENST00000402069 882 ntBASIC18.79■□□□□ 0.6
VPS13CQ709C8 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS13CQ709C8 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.79■□□□□ 0.6
VPS13CQ709C8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 AL499627.2-201ENST00000606283 725 ntBASIC18.78■□□□□ 0.6
VPS13CQ709C8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13CQ709C8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS13CQ709C8 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS13CQ709C8 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13CQ709C8 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS13CQ709C8 TSPY20P-201ENST00000450910 630 ntBASIC18.77■□□□□ 0.6
VPS13CQ709C8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS13CQ709C8 TPRG1LP1-201ENST00000598702 760 ntBASIC18.77■□□□□ 0.6
VPS13CQ709C8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS13CQ709C8 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13CQ709C8 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13CQ709C8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.77■□□□□ 0.59
VPS13CQ709C8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.59
VPS13CQ709C8 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VPS13CQ709C8 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VPS13CQ709C8 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13CQ709C8 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VPS13CQ709C8 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13CQ709C8 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13CQ709C8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13CQ709C8 AC026185.1-201ENST00000445748 174 ntBASIC18.76■□□□□ 0.59
VPS13CQ709C8 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS13CQ709C8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13CQ709C8 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS13CQ709C8 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13CQ709C8 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms