Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC142086.2-201ENST00000569753 217 ntBASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CSPG4Q6UVK1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CSPG4Q6UVK1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
CSPG4Q6UVK1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 TSPY20P-201ENST00000450910 630 ntBASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CSPG4Q6UVK1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 AP005435.1-201ENST00000529293 1178 ntBASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CSPG4Q6UVK1 AC004854.2-201ENST00000608450 1441 ntBASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 AC010525.1-201ENST00000585559 441 ntBASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.49■□□□□ 0.55
CSPG4Q6UVK1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 AC133637.1-201ENST00000624115 1537 ntBASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 AC141586.4-201ENST00000624558 1573 ntBASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 AC073111.5-205ENST00000641717 521 ntBASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 NCF1B-203ENST00000435988 1254 ntBASIC18.48■□□□□ 0.55
CSPG4Q6UVK1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 AC022211.4-201ENST00000625094 2161 ntBASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CSPG4Q6UVK1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 AL355802.2-201ENST00000402069 882 ntBASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CSPG4Q6UVK1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms