Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CCL20P78556 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCL20P78556 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCL20P78556 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC17.59■□□□□ 0.41
CCL20P78556 NRG1-221ENST00000614767 762 ntTSL 5 BASIC17.59■□□□□ 0.41
CCL20P78556 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.59■□□□□ 0.41
CCL20P78556 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCL20P78556 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.58■□□□□ 0.41
CCL20P78556 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCL20P78556 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCL20P78556 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCL20P78556 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCL20P78556 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCL20P78556 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.58■□□□□ 0.4
CCL20P78556 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCL20P78556 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
CCL20P78556 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCL20P78556 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCL20P78556 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCL20P78556 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCL20P78556 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCL20P78556 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CCL20P78556 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCL20P78556 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCL20P78556 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CCL20P78556 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.57■□□□□ 0.4
CCL20P78556 LINC01971-201ENST00000617888 1048 ntBASIC17.57■□□□□ 0.4
CCL20P78556 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCL20P78556 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
CCL20P78556 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCL20P78556 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.56■□□□□ 0.4
CCL20P78556 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
CCL20P78556 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CCL20P78556 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.56■□□□□ 0.4
CCL20P78556 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CCL20P78556 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCL20P78556 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
CCL20P78556 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.56■□□□□ 0.4
CCL20P78556 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.55■□□□□ 0.4
CCL20P78556 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCL20P78556 AC010542.4-201ENST00000563151 1910 ntBASIC17.55■□□□□ 0.4
CCL20P78556 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CCL20P78556 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 AC025884.2-201ENST00000553429 711 ntBASIC17.55■□□□□ 0.4
CCL20P78556 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCL20P78556 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 AL157384.1-201ENST00000445995 2473 ntBASIC17.55■□□□□ 0.4
CCL20P78556 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.55■□□□□ 0.4
CCL20P78556 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCL20P78556 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.54■□□□□ 0.4
CCL20P78556 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.54■□□□□ 0.4
CCL20P78556 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCL20P78556 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCL20P78556 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCL20P78556 MIR3960-201ENST00000583311 91 ntBASIC17.54■□□□□ 0.4
CCL20P78556 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCL20P78556 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms