Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
NKX3-2P78367 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.98■■□□□ 1.59
NKX3-2P78367 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX3-2P78367 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX3-2P78367 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX3-2P78367 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
NKX3-2P78367 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
NKX3-2P78367 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
NKX3-2P78367 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC24.97■■□□□ 1.59
NKX3-2P78367 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.97■■□□□ 1.59
NKX3-2P78367 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX3-2P78367 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
NKX3-2P78367 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.97■■□□□ 1.59
NKX3-2P78367 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX3-2P78367 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX3-2P78367 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX3-2P78367 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.96■■□□□ 1.59
NKX3-2P78367 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX3-2P78367 ID1-201ENST00000376105 1233 ntBASIC24.96■■□□□ 1.59
NKX3-2P78367 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.96■■□□□ 1.59
NKX3-2P78367 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
NKX3-2P78367 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.96■■□□□ 1.59
NKX3-2P78367 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.95■■□□□ 1.59
NKX3-2P78367 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.95■■□□□ 1.59
NKX3-2P78367 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
NKX3-2P78367 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
NKX3-2P78367 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.95■■□□□ 1.58
NKX3-2P78367 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.95■■□□□ 1.58
NKX3-2P78367 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
NKX3-2P78367 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
NKX3-2P78367 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
NKX3-2P78367 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
NKX3-2P78367 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
NKX3-2P78367 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
NKX3-2P78367 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
NKX3-2P78367 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
NKX3-2P78367 AC144652.1-201ENST00000609974 1624 ntBASIC24.94■■□□□ 1.58
NKX3-2P78367 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
NKX3-2P78367 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.93■■□□□ 1.58
NKX3-2P78367 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.93■■□□□ 1.58
NKX3-2P78367 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
NKX3-2P78367 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC24.93■■□□□ 1.58
NKX3-2P78367 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
NKX3-2P78367 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
NKX3-2P78367 LINC01529-204ENST00000636474 1715 ntBASIC24.92■■□□□ 1.58
NKX3-2P78367 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
NKX3-2P78367 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
NKX3-2P78367 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
NKX3-2P78367 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
NKX3-2P78367 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
NKX3-2P78367 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
NKX3-2P78367 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.92■■□□□ 1.58
NKX3-2P78367 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.92■■□□□ 1.58
NKX3-2P78367 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.92■■□□□ 1.58
NKX3-2P78367 AC022211.4-201ENST00000625094 2161 ntBASIC24.91■■□□□ 1.58
NKX3-2P78367 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
NKX3-2P78367 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
NKX3-2P78367 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.91■■□□□ 1.58
NKX3-2P78367 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
NKX3-2P78367 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.91■■□□□ 1.58
NKX3-2P78367 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
NKX3-2P78367 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
NKX3-2P78367 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
NKX3-2P78367 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.9■■□□□ 1.58
NKX3-2P78367 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.9■■□□□ 1.58
NKX3-2P78367 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
NKX3-2P78367 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
NKX3-2P78367 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.9■■□□□ 1.58
NKX3-2P78367 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC24.9■■□□□ 1.58
NKX3-2P78367 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.9■■□□□ 1.58
NKX3-2P78367 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
NKX3-2P78367 AC105233.4-201ENST00000642045 216 ntBASIC24.9■■□□□ 1.58
NKX3-2P78367 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
NKX3-2P78367 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
NKX3-2P78367 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.89■■□□□ 1.58
NKX3-2P78367 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.58
NKX3-2P78367 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
NKX3-2P78367 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.89■■□□□ 1.58
NKX3-2P78367 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.89■■□□□ 1.58
NKX3-2P78367 AC006015.1-201ENST00000429970 570 ntBASIC24.89■■□□□ 1.58
NKX3-2P78367 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.89■■□□□ 1.58
NKX3-2P78367 KRT18P61-201ENST00000585825 1298 ntBASIC24.89■■□□□ 1.58
NKX3-2P78367 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
NKX3-2P78367 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
NKX3-2P78367 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
NKX3-2P78367 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
NKX3-2P78367 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.88■■□□□ 1.57
NKX3-2P78367 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.88■■□□□ 1.57
NKX3-2P78367 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.88■■□□□ 1.57
NKX3-2P78367 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.88■■□□□ 1.57
NKX3-2P78367 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.88■■□□□ 1.57
NKX3-2P78367 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
NKX3-2P78367 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
NKX3-2P78367 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms