Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.81■■□□□ 1.4
VCPP55072 AC008764.7-201ENST00000593779 1081 ntBASIC23.81■■□□□ 1.4
VCPP55072 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.81■■□□□ 1.4
VCPP55072 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.81■■□□□ 1.4
VCPP55072 AC133561.1-201ENST00000568600 2415 ntBASIC23.81■■□□□ 1.4
VCPP55072 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.81■■□□□ 1.4
VCPP55072 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VCPP55072 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
VCPP55072 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.8■■□□□ 1.4
VCPP55072 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.8■■□□□ 1.4
VCPP55072 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 KRT18P5-201ENST00000436075 1291 ntBASIC23.8■■□□□ 1.4
VCPP55072 AC034268.1-201ENST00000441047 882 ntBASIC23.8■■□□□ 1.4
VCPP55072 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.8■■□□□ 1.4
VCPP55072 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.8■■□□□ 1.4
VCPP55072 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.8■■□□□ 1.4
VCPP55072 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VCPP55072 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VCPP55072 AC068473.5-201ENST00000616428 2072 ntBASIC23.79■■□□□ 1.4
VCPP55072 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VCPP55072 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.79■■□□□ 1.4
VCPP55072 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VCPP55072 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.79■■□□□ 1.4
VCPP55072 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
VCPP55072 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.78■■□□□ 1.4
VCPP55072 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VCPP55072 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
VCPP55072 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VCPP55072 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.78■■□□□ 1.4
VCPP55072 SLC47A1P1-202ENST00000449666 945 ntBASIC23.78■■□□□ 1.4
VCPP55072 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.78■■□□□ 1.4
VCPP55072 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC23.78■■□□□ 1.4
VCPP55072 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
VCPP55072 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VCPP55072 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VCPP55072 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VCPP55072 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.78■■□□□ 1.4
VCPP55072 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.78■■□□□ 1.4
VCPP55072 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
VCPP55072 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VCPP55072 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
VCPP55072 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VCPP55072 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
VCPP55072 AC012676.1-201ENST00000574705 1949 ntBASIC23.77■■□□□ 1.4
VCPP55072 SERBP1P1-201ENST00000396021 1160 ntBASIC23.77■■□□□ 1.4
VCPP55072 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VCPP55072 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VCPP55072 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
VCPP55072 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VCPP55072 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
VCPP55072 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.39
VCPP55072 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.76■■□□□ 1.39
VCPP55072 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.76■■□□□ 1.39
VCPP55072 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
VCPP55072 AC004911.1-201ENST00000416316 871 ntBASIC23.76■■□□□ 1.39
VCPP55072 AC099791.1-201ENST00000416440 715 ntBASIC23.76■■□□□ 1.39
VCPP55072 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.76■■□□□ 1.39
VCPP55072 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.76■■□□□ 1.39
VCPP55072 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.76■■□□□ 1.39
VCPP55072 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.76■■□□□ 1.39
VCPP55072 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.76■■□□□ 1.39
VCPP55072 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VCPP55072 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VCPP55072 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
VCPP55072 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
VCPP55072 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VCPP55072 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
VCPP55072 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.75■■□□□ 1.39
VCPP55072 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
VCPP55072 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VCPP55072 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VCPP55072 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.74■■□□□ 1.39
VCPP55072 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VCPP55072 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VCPP55072 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.74■■□□□ 1.39
VCPP55072 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.73■■□□□ 1.39
VCPP55072 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.73■■□□□ 1.39
VCPP55072 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.73■■□□□ 1.39
VCPP55072 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.73■■□□□ 1.39
VCPP55072 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VCPP55072 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.73■■□□□ 1.39
VCPP55072 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.73■■□□□ 1.39
VCPP55072 AL161729.1-201ENST00000604104 1402 ntBASIC23.73■■□□□ 1.39
VCPP55072 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.73■■□□□ 1.39
VCPP55072 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.73■■□□□ 1.39
VCPP55072 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VCPP55072 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.72■■□□□ 1.39
VCPP55072 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.72■■□□□ 1.39
VCPP55072 AL031602.1-201ENST00000633169 911 ntBASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms