Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GXYLT1P2-201ENST00000433312 1230 ntBASIC30■■■□□ 2.39
COL18A1P39060 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC30■■■□□ 2.39
COL18A1P39060 AP005435.1-201ENST00000529293 1178 ntBASIC30■■■□□ 2.39
COL18A1P39060 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC30■■■□□ 2.39
COL18A1P39060 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30■■■□□ 2.39
COL18A1P39060 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30■■■□□ 2.39
COL18A1P39060 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC30■■■□□ 2.39
COL18A1P39060 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC30■■■□□ 2.39
COL18A1P39060 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30■■■□□ 2.39
COL18A1P39060 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC30■■■□□ 2.39
COL18A1P39060 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL18A1P39060 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC29.99■■■□□ 2.39
COL18A1P39060 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL18A1P39060 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL18A1P39060 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC29.99■■■□□ 2.39
COL18A1P39060 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL18A1P39060 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC29.99■■■□□ 2.39
COL18A1P39060 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC29.99■■■□□ 2.39
COL18A1P39060 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC29.99■■■□□ 2.39
COL18A1P39060 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL18A1P39060 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL18A1P39060 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC29.98■■■□□ 2.39
COL18A1P39060 DUX4L4-201ENST00000566884 1269 ntBASIC29.98■■■□□ 2.39
COL18A1P39060 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC29.98■■■□□ 2.39
COL18A1P39060 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 MPST-204ENST00000404393 1329 ntTSL 5 BASIC29.98■■■□□ 2.39
COL18A1P39060 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL18A1P39060 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC29.98■■■□□ 2.39
COL18A1P39060 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC29.98■■■□□ 2.39
COL18A1P39060 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
COL18A1P39060 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL18A1P39060 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC29.97■■■□□ 2.39
COL18A1P39060 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
COL18A1P39060 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC29.97■■■□□ 2.39
COL18A1P39060 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC29.97■■■□□ 2.39
COL18A1P39060 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC29.97■■■□□ 2.39
COL18A1P39060 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL18A1P39060 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
COL18A1P39060 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL18A1P39060 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
COL18A1P39060 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC29.95■■■□□ 2.39
COL18A1P39060 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
COL18A1P39060 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC29.95■■■□□ 2.39
COL18A1P39060 FP325331.1-202ENST00000623531 1380 ntBASIC29.95■■■□□ 2.39
COL18A1P39060 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
COL18A1P39060 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.38
COL18A1P39060 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC29.95■■■□□ 2.38
COL18A1P39060 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC29.95■■■□□ 2.38
COL18A1P39060 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC29.94■■■□□ 2.38
COL18A1P39060 LINC02228-203ENST00000641970 1355 ntBASIC29.94■■■□□ 2.38
COL18A1P39060 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL18A1P39060 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL18A1P39060 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC29.94■■■□□ 2.38
COL18A1P39060 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL18A1P39060 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
COL18A1P39060 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC29.93■■■□□ 2.38
COL18A1P39060 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
COL18A1P39060 EI24-213ENST00000618552 1747 ntTSL 5 BASIC29.93■■■□□ 2.38
COL18A1P39060 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC29.93■■■□□ 2.38
COL18A1P39060 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC29.93■■■□□ 2.38
COL18A1P39060 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC29.93■■■□□ 2.38
COL18A1P39060 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC29.93■■■□□ 2.38
COL18A1P39060 AC073111.5-205ENST00000641717 521 ntBASIC29.93■■■□□ 2.38
COL18A1P39060 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC29.93■■■□□ 2.38
COL18A1P39060 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
COL18A1P39060 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC29.93■■■□□ 2.38
COL18A1P39060 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC29.92■■■□□ 2.38
COL18A1P39060 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC29.92■■■□□ 2.38
COL18A1P39060 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC29.92■■■□□ 2.38
COL18A1P39060 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
COL18A1P39060 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC29.92■■■□□ 2.38
COL18A1P39060 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC29.92■■■□□ 2.38
COL18A1P39060 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL18A1P39060 TK2-208ENST00000545043 1120 ntTSL 2 BASIC29.92■■■□□ 2.38
COL18A1P39060 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL18A1P39060 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL18A1P39060 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC29.91■■■□□ 2.38
COL18A1P39060 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC29.91■■■□□ 2.38
COL18A1P39060 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC29.91■■■□□ 2.38
COL18A1P39060 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL18A1P39060 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL18A1P39060 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL18A1P39060 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL18A1P39060 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC29.9■■■□□ 2.38
COL18A1P39060 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL18A1P39060 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL18A1P39060 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL18A1P39060 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC29.9■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms