Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC29.93■■■□□ 2.38
RXRBP28702 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
RXRBP28702 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
RXRBP28702 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC29.92■■■□□ 2.38
RXRBP28702 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC29.92■■■□□ 2.38
RXRBP28702 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
RXRBP28702 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
RXRBP28702 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
RXRBP28702 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
RXRBP28702 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC29.91■■■□□ 2.38
RXRBP28702 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC29.91■■■□□ 2.38
RXRBP28702 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC29.91■■■□□ 2.38
RXRBP28702 RNA5SP413-201ENST00000516373 109 ntBASIC29.91■■■□□ 2.38
RXRBP28702 AC098934.4-201ENST00000564127 592 ntBASIC29.91■■■□□ 2.38
RXRBP28702 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC29.91■■■□□ 2.38
RXRBP28702 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
RXRBP28702 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC29.9■■■□□ 2.38
RXRBP28702 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC29.9■■■□□ 2.38
RXRBP28702 GCSHP5-201ENST00000443090 522 ntBASIC29.9■■■□□ 2.38
RXRBP28702 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
RXRBP28702 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC29.9■■■□□ 2.38
RXRBP28702 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
RXRBP28702 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
RXRBP28702 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.38
RXRBP28702 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
RXRBP28702 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
RXRBP28702 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC29.89■■■□□ 2.38
RXRBP28702 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
RXRBP28702 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC29.88■■■□□ 2.37
RXRBP28702 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
RXRBP28702 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC29.88■■■□□ 2.37
RXRBP28702 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC29.88■■■□□ 2.37
RXRBP28702 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
RXRBP28702 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC29.87■■■□□ 2.37
RXRBP28702 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
RXRBP28702 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC29.87■■■□□ 2.37
RXRBP28702 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
RXRBP28702 DUX4L16-201ENST00000555130 1264 ntBASIC29.87■■■□□ 2.37
RXRBP28702 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC29.87■■■□□ 2.37
RXRBP28702 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC29.87■■■□□ 2.37
RXRBP28702 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
RXRBP28702 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
RXRBP28702 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
RXRBP28702 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC29.87■■■□□ 2.37
RXRBP28702 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC29.86■■■□□ 2.37
RXRBP28702 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
RXRBP28702 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
RXRBP28702 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
RXRBP28702 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC29.86■■■□□ 2.37
RXRBP28702 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
RXRBP28702 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
RXRBP28702 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
RXRBP28702 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC29.85■■■□□ 2.37
RXRBP28702 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
RXRBP28702 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
RXRBP28702 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC29.84■■■□□ 2.37
RXRBP28702 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
RXRBP28702 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
RXRBP28702 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
RXRBP28702 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC29.84■■■□□ 2.37
RXRBP28702 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
RXRBP28702 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.83■■■□□ 2.37
RXRBP28702 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
RXRBP28702 BAALC-201ENST00000297574 801 ntTSL 3 BASIC29.83■■■□□ 2.37
RXRBP28702 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC29.83■■■□□ 2.37
RXRBP28702 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC29.83■■■□□ 2.37
RXRBP28702 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC29.83■■■□□ 2.37
RXRBP28702 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC29.83■■■□□ 2.37
RXRBP28702 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC29.83■■■□□ 2.37
RXRBP28702 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC29.83■■■□□ 2.37
RXRBP28702 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RXRBP28702 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC29.82■■■□□ 2.36
RXRBP28702 AF201337.1-201ENST00000520239 748 ntBASIC29.82■■■□□ 2.36
RXRBP28702 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC29.82■■■□□ 2.36
RXRBP28702 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
RXRBP28702 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.82■■■□□ 2.36
RXRBP28702 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RXRBP28702 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC29.81■■■□□ 2.36
RXRBP28702 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC29.81■■■□□ 2.36
RXRBP28702 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
RXRBP28702 SLC7A5P1-201ENST00000568957 537 ntBASIC29.81■■■□□ 2.36
RXRBP28702 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC29.81■■■□□ 2.36
RXRBP28702 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
RXRBP28702 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
RXRBP28702 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
RXRBP28702 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.81■■■□□ 2.36
RXRBP28702 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.8■■■□□ 2.36
RXRBP28702 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC29.8■■■□□ 2.36
RXRBP28702 IRX5-204ENST00000560154 879 ntTSL 5 BASIC29.8■■■□□ 2.36
RXRBP28702 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
RXRBP28702 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
RXRBP28702 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
RXRBP28702 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC29.79■■■□□ 2.36
RXRBP28702 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RXRBP28702 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
RXRBP28702 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RXRBP28702 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RXRBP28702 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RXRBP28702 AC010331.1-201ENST00000611423 582 ntBASIC29.79■■■□□ 2.36
RXRBP28702 BX005040.4-201ENST00000637145 1518 ntBASIC29.79■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms