Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.341e-6■■■■□ 20.4
YBX3P16989 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.44■□□□□ 0.221e-6■■■■□ 20.4
YBX3P16989 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.017e-16■■■■□ 20.4
YBX3P16989 ATP5F1-201ENST00000369721 1040 ntTSL 210.65□□□□□ -0.77e-16■■■■□ 20.4
YBX3P16989 ATP5F1-204ENST00000468818 859 ntTSL 36.44□□□□□ -1.387e-16■■■■□ 20.4
YBX3P16989 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.04■□□□□ 0.162e-8■■■■□ 20.4
YBX3P16989 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 02e-8■■■■□ 20.4
YBX3P16989 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.2□□□□□ -1.742e-8■■■■□ 20.4
YBX3P16989 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.083e-6■■■■□ 20.4
YBX3P16989 CDCA2-202ENST00000380665 3565 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.273e-6■■■■□ 20.4
YBX3P16989 CDCA2-204ENST00000521098 2409 ntTSL 55.87□□□□□ -1.473e-6■■■■□ 20.4
YBX3P16989 TPD52L1-209ENST00000530868 650 ntTSL 317.81■□□□□ 0.447e-20■■■■□ 20.4
YBX3P16989 TPD52L1-217ENST00000576089 642 ntTSL 314.35□□□□□ -0.117e-20■■■■□ 20.4
YBX3P16989 TPD52L1-216ENST00000571678 2486 nt12.64□□□□□ -0.397e-20■■■■□ 20.4
YBX3P16989 AC005019.1-201ENST00000436455 431 ntBASIC5.12□□□□□ -1.596e-12■■■■□ 20.3
YBX3P16989 ERBB3-216ENST00000550869 572 ntTSL 415.84■□□□□ 0.131e-6■■■■□ 20.3
YBX3P16989 MGST3-207ENST00000461308 1002 ntTSL 1 (best)10.61□□□□□ -0.714e-14■■■■□ 20.3
YBX3P16989 VAMP3-201ENST00000054666 2205 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -19e-8■■■■□ 20.3
YBX3P16989 ORC5-207ENST00000485726 1214 ntTSL 322.23■■□□□ 1.155e-6■■■■□ 20.3
YBX3P16989 ORC5-203ENST00000447452 1409 ntTSL 1 (best) BASIC16.4■□□□□ 0.225e-6■■■■□ 20.3
YBX3P16989 MRPL9-204ENST00000462783 693 ntTSL 1 (best)21.94■■□□□ 1.11e-6■■■■□ 20.3
YBX3P16989 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.9■□□□□ 0.466e-14■■■■□ 20.3
YBX3P16989 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.8■■□□□ 1.883e-8■■■■□ 20.3
YBX3P16989 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.453e-8■■■■□ 20.3
YBX3P16989 LYPLA1-204ENST00000518546 746 ntTSL 318.94■□□□□ 0.623e-8■■■■□ 20.3
YBX3P16989 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC17.22■□□□□ 0.353e-8■■■■□ 20.3
YBX3P16989 LYPLA1-212ENST00000521898 344 ntTSL 515.52■□□□□ 0.083e-8■■■■□ 20.3
YBX3P16989 LYPLA1-213ENST00000522007 250 ntTSL 2 BASIC15□□□□□ -0.013e-8■■■■□ 20.3
YBX3P16989 LRRCC1-206ENST00000523669 1004 ntTSL 1 (best)30.02■■■□□ 2.45e-7■■■■□ 20.3
YBX3P16989 LRRCC1-204ENST00000522567 2122 ntTSL 1 (best)18.31■□□□□ 0.525e-7■■■■□ 20.3
YBX3P16989 LRRCC1-203ENST00000517875 2385 ntTSL 1 (best)18.13■□□□□ 0.495e-7■■■■□ 20.3
YBX3P16989 LRRCC1-205ENST00000522770 2800 ntTSL 215.74■□□□□ 0.115e-7■■■■□ 20.3
YBX3P16989 LRRCC1-201ENST00000360375 3813 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.395e-7■■■■□ 20.3
YBX3P16989 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.945e-7■■■■□ 20.3
YBX3P16989 CNOT7-206ENST00000519954 1209 ntTSL 318.14■□□□□ 0.494e-10■■■■□ 20.3
YBX3P16989 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC15.92■□□□□ 0.144e-10■■■■□ 20.3
YBX3P16989 CNOT7-205ENST00000519918 680 ntTSL 28.29□□□□□ -1.084e-10■■■■□ 20.3
YBX3P16989 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.134e-10■■■■□ 20.3
YBX3P16989 FAM216A-205ENST00000548449 929 ntTSL 1 (best)30.52■■■□□ 2.481e-6■■■■□ 20.3
YBX3P16989 FAM216A-202ENST00000538285 1679 ntTSL 1 (best)24.54■■□□□ 1.521e-6■■■■□ 20.3
YBX3P16989 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.41e-6■■■■□ 20.3
YBX3P16989 FAM216A-206ENST00000548869 1160 ntTSL 28.63□□□□□ -1.031e-6■■■■□ 20.3
YBX3P16989 FAM216A-203ENST00000546396 792 ntTSL 56.24□□□□□ -1.411e-6■■■■□ 20.3
YBX3P16989 CD151-221ENST00000532075 786 ntTSL 222.52■■□□□ 1.22e-20■■■■□ 20.3
YBX3P16989 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC27.31■■□□□ 1.966e-7■■■■□ 20.3
YBX3P16989 RWDD4-204ENST00000510702 1620 ntTSL 524.77■■□□□ 1.566e-7■■■■□ 20.3
YBX3P16989 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC20.07■□□□□ 0.86e-7■■■■□ 20.3
YBX3P16989 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.1■□□□□ 0.496e-7■■■■□ 20.3
YBX3P16989 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.476e-7■■■■□ 20.3
YBX3P16989 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.07■□□□□ 0.648e-11■■■■□ 20.2
YBX3P16989 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.448e-11■■■■□ 20.2
YBX3P16989 AC134978.1-201ENST00000579480 788 ntTSL 3 BASIC13.55□□□□□ -0.242e-7■■■■□ 20.2
YBX3P16989 NFXL1-205ENST00000507131 2664 ntTSL 217.08■□□□□ 0.333e-7■■■■□ 20.2
YBX3P16989 NFXL1-203ENST00000464756 3865 ntTSL 1 (best)13.23□□□□□ -0.293e-7■■■■□ 20.2
YBX3P16989 NFXL1-201ENST00000329043 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.363e-7■■■■□ 20.2
YBX3P16989 NFXL1-206ENST00000507489 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.453e-7■■■■□ 20.2
YBX3P16989 NFXL1-202ENST00000381538 3728 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.463e-7■■■■□ 20.2
YBX3P16989 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC22.59■■□□□ 1.215e-15■■■■□ 20.2
YBX3P16989 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.381e-323■■■■□ 20.2
YBX3P16989 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.351e-323■■■■□ 20.2
YBX3P16989 CLMN-202ENST00000553733 565 ntTSL 424.67■■□□□ 1.543e-6■■■■□ 20.2
YBX3P16989 CLMN-204ENST00000555615 685 ntTSL 511.75□□□□□ -0.533e-6■■■■□ 20.2
YBX3P16989 CLMN-203ENST00000555336 718 ntTSL 56.73□□□□□ -1.333e-6■■■■□ 20.2
YBX3P16989 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.433e-6■■■■□ 20.2
YBX3P16989 MRPL21-206ENST00000544567 654 ntTSL 326.76■■□□□ 1.872e-8■■■■□ 20.2
YBX3P16989 MRPL21-204ENST00000541265 555 ntTSL 418.44■□□□□ 0.542e-8■■■■□ 20.2
YBX3P16989 MRPL21-207ENST00000565125 2283 ntTSL 518.16■□□□□ 0.52e-8■■■■□ 20.2
YBX3P16989 MRPL21-201ENST00000362034 683 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.032e-8■■■■□ 20.2
YBX3P16989 MRPL21-205ENST00000541279 764 ntTSL 512.93□□□□□ -0.342e-8■■■■□ 20.2
YBX3P16989 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.96■■□□□ 1.911e-11■■■■□ 20.2
YBX3P16989 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.661e-11■■■■□ 20.2
YBX3P16989 MRPS7-207ENST00000584678 692 ntTSL 514.98□□□□□ -0.011e-11■■■■□ 20.2
YBX3P16989 MRPS7-205ENST00000581993 731 ntTSL 214.56□□□□□ -0.081e-11■■■■□ 20.2
YBX3P16989 MRPS7-206ENST00000583407 864 ntTSL 313.74□□□□□ -0.211e-11■■■■□ 20.2
YBX3P16989 NANS-205ENST00000480925 649 ntTSL 220.22■□□□□ 0.839e-7■■■■□ 20.2
YBX3P16989 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.352e-6■■■■□ 20.2
YBX3P16989 UGP2-212ENST00000480679 505 ntTSL 528.07■■■□□ 2.082e-6■■■■□ 20.2
YBX3P16989 UGP2-223ENST00000493222 864 ntTSL 328.07■■■□□ 2.082e-6■■■■□ 20.2
YBX3P16989 UGP2-227ENST00000497510 722 ntTSL 426.79■■□□□ 1.882e-6■■■■□ 20.2
YBX3P16989 UGP2-219ENST00000487469 1015 ntTSL 525.35■■□□□ 1.652e-6■■■■□ 20.2
YBX3P16989 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.52e-6■■■■□ 20.2
YBX3P16989 UGP2-213ENST00000482668 645 ntTSL 324.08■■□□□ 1.452e-6■■■■□ 20.2
YBX3P16989 UGP2-215ENST00000483461 495 ntTSL 423.84■■□□□ 1.412e-6■■■■□ 20.2
YBX3P16989 UGP2-205ENST00000466642 1023 ntTSL 422.8■■□□□ 1.242e-6■■■■□ 20.2
YBX3P16989 UGP2-208ENST00000467999 747 ntTSL 522.36■■□□□ 1.172e-6■■■■□ 20.2
YBX3P16989 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.022e-6■■■■□ 20.2
YBX3P16989 UGP2-217ENST00000484142 553 ntTSL 420.87■□□□□ 0.932e-6■■■■□ 20.2
YBX3P16989 UGP2-206ENST00000467400 717 ntTSL 520.72■□□□□ 0.912e-6■■■■□ 20.2
YBX3P16989 UGP2-214ENST00000483108 598 ntTSL 420.21■□□□□ 0.832e-6■■■■□ 20.2
YBX3P16989 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.62■□□□□ 0.732e-6■■■■□ 20.2
YBX3P16989 UGP2-221ENST00000488245 784 ntTSL 519.19■□□□□ 0.662e-6■■■■□ 20.2
YBX3P16989 UGP2-216ENST00000484056 606 ntTSL 518.8■□□□□ 0.62e-6■■■■□ 20.2
YBX3P16989 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-6■■■■□ 20.2
YBX3P16989 PIK3R2-202ENST00000426902 3273 ntTSL 217.45■□□□□ 0.382e-6■■■■□ 20.2
YBX3P16989 UGP2-226ENST00000496334 565 ntTSL 514.94□□□□□ -0.022e-6■■■■□ 20.2
YBX3P16989 SERPINF1-207ENST00000572048 573 ntTSL 213.76□□□□□ -0.212e-6■■■■□ 20.2
YBX3P16989 NPRL3-210ENST00000610509 2917 ntTSL 213.45□□□□□ -0.262e-6■■■■□ 20.2
YBX3P16989 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.262e-6■■■■□ 20.2
YBX3P16989 FBXW7-212ENST00000604872 970 ntTSL 1 (best) BASIC12.42□□□□□ -0.422e-6■■■■□ 20.2
YBX3P16989 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.472e-6■■■■□ 20.2
Retrieved 100 of 29,075 protein–RNA pairs in 506.9 ms