Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC29.82■■■□□ 2.36
COL3A1P02461 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
COL3A1P02461 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC29.82■■■□□ 2.36
COL3A1P02461 ANOS2P-203ENST00000472227 1816 ntBASIC29.81■■■□□ 2.36
COL3A1P02461 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC29.81■■■□□ 2.36
COL3A1P02461 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.81■■■□□ 2.36
COL3A1P02461 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 AC091305.1-201ENST00000479476 895 ntBASIC29.81■■■□□ 2.36
COL3A1P02461 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC29.81■■■□□ 2.36
COL3A1P02461 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC29.81■■■□□ 2.36
COL3A1P02461 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC29.81■■■□□ 2.36
COL3A1P02461 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
COL3A1P02461 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.81■■■□□ 2.36
COL3A1P02461 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL3A1P02461 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL3A1P02461 AC010525.1-201ENST00000585559 441 ntBASIC29.8■■■□□ 2.36
COL3A1P02461 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC29.8■■■□□ 2.36
COL3A1P02461 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC29.8■■■□□ 2.36
COL3A1P02461 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL3A1P02461 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
COL3A1P02461 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC29.8■■■□□ 2.36
COL3A1P02461 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL3A1P02461 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
COL3A1P02461 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
COL3A1P02461 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL3A1P02461 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL3A1P02461 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL3A1P02461 GUK1-205ENST00000366722 850 ntTSL 3 BASIC29.79■■■□□ 2.36
COL3A1P02461 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
COL3A1P02461 AC099791.1-201ENST00000416440 715 ntBASIC29.79■■■□□ 2.36
COL3A1P02461 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
COL3A1P02461 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC29.79■■■□□ 2.36
COL3A1P02461 CA15P2-201ENST00000611168 834 ntBASIC29.79■■■□□ 2.36
COL3A1P02461 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
COL3A1P02461 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC29.79■■■□□ 2.36
COL3A1P02461 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
COL3A1P02461 BX842568.3-201ENST00000418104 571 ntBASIC29.78■■■□□ 2.36
COL3A1P02461 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC29.78■■■□□ 2.36
COL3A1P02461 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
COL3A1P02461 AC105265.2-201ENST00000467189 838 ntBASIC29.78■■■□□ 2.36
COL3A1P02461 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL3A1P02461 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL3A1P02461 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL3A1P02461 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL3A1P02461 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL3A1P02461 RASA4CP-201ENST00000424092 1398 ntBASIC29.76■■■□□ 2.35
COL3A1P02461 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.35
COL3A1P02461 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL3A1P02461 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
COL3A1P02461 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL3A1P02461 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL3A1P02461 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL3A1P02461 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL3A1P02461 AL353803.4-201ENST00000565882 1934 ntBASIC29.75■■■□□ 2.35
COL3A1P02461 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL3A1P02461 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL3A1P02461 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC29.75■■■□□ 2.35
COL3A1P02461 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.75■■■□□ 2.35
COL3A1P02461 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC29.75■■■□□ 2.35
COL3A1P02461 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL3A1P02461 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC29.75■■■□□ 2.35
COL3A1P02461 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC29.75■■■□□ 2.35
COL3A1P02461 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC29.75■■■□□ 2.35
COL3A1P02461 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL3A1P02461 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL3A1P02461 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL3A1P02461 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
COL3A1P02461 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC29.74■■■□□ 2.35
COL3A1P02461 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC29.74■■■□□ 2.35
COL3A1P02461 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL3A1P02461 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL3A1P02461 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC29.74■■■□□ 2.35
COL3A1P02461 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL3A1P02461 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC29.74■■■□□ 2.35
COL3A1P02461 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC29.74■■■□□ 2.35
COL3A1P02461 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL3A1P02461 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.73■■■□□ 2.35
COL3A1P02461 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC29.73■■■□□ 2.35
COL3A1P02461 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL3A1P02461 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL3A1P02461 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL3A1P02461 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
COL3A1P02461 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC29.72■■■□□ 2.35
COL3A1P02461 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC29.72■■■□□ 2.35
COL3A1P02461 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.72■■■□□ 2.35
COL3A1P02461 AC008764.7-201ENST00000593779 1081 ntBASIC29.72■■■□□ 2.35
COL3A1P02461 AC233992.3-201ENST00000607491 485 ntBASIC29.72■■■□□ 2.35
COL3A1P02461 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29.71■■■□□ 2.35
COL3A1P02461 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
COL3A1P02461 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC29.71■■■□□ 2.35
COL3A1P02461 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC29.71■■■□□ 2.35
COL3A1P02461 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL3A1P02461 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL3A1P02461 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.7■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms