Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.09■■□□□ 1.61
PGK1P00558 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
PGK1P00558 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PGK1P00558 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.09■■□□□ 1.61
PGK1P00558 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.09■■□□□ 1.61
PGK1P00558 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PGK1P00558 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PGK1P00558 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PGK1P00558 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC25.08■■□□□ 1.61
PGK1P00558 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25.08■■□□□ 1.61
PGK1P00558 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.08■■□□□ 1.61
PGK1P00558 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.08■■□□□ 1.61
PGK1P00558 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PGK1P00558 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PGK1P00558 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
PGK1P00558 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.08■■□□□ 1.6
PGK1P00558 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
PGK1P00558 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
PGK1P00558 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
PGK1P00558 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.07■■□□□ 1.6
PGK1P00558 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.07■■□□□ 1.6
PGK1P00558 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
PGK1P00558 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC25.07■■□□□ 1.6
PGK1P00558 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
PGK1P00558 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PGK1P00558 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
PGK1P00558 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
PGK1P00558 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PGK1P00558 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
PGK1P00558 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.06■■□□□ 1.6
PGK1P00558 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25.06■■□□□ 1.6
PGK1P00558 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PGK1P00558 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PGK1P00558 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
PGK1P00558 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PGK1P00558 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PGK1P00558 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC25.05■■□□□ 1.6
PGK1P00558 HLA-L-209ENST00000420110 1011 ntBASIC25.05■■□□□ 1.6
PGK1P00558 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC25.05■■□□□ 1.6
PGK1P00558 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.05■■□□□ 1.6
PGK1P00558 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC25.05■■□□□ 1.6
PGK1P00558 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.05■■□□□ 1.6
PGK1P00558 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC25.05■■□□□ 1.6
PGK1P00558 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.05■■□□□ 1.6
PGK1P00558 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.05■■□□□ 1.6
PGK1P00558 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC25.05■■□□□ 1.6
PGK1P00558 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.04■■□□□ 1.6
PGK1P00558 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PGK1P00558 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PGK1P00558 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PGK1P00558 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PGK1P00558 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
PGK1P00558 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
PGK1P00558 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PGK1P00558 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC25.03■■□□□ 1.6
PGK1P00558 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC25.03■■□□□ 1.6
PGK1P00558 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.03■■□□□ 1.6
PGK1P00558 AC105233.4-201ENST00000642045 216 ntBASIC25.03■■□□□ 1.6
PGK1P00558 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.03■■□□□ 1.6
PGK1P00558 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PGK1P00558 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PGK1P00558 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PGK1P00558 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
PGK1P00558 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PGK1P00558 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PGK1P00558 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PGK1P00558 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.02■■□□□ 1.6
PGK1P00558 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.02■■□□□ 1.6
PGK1P00558 AP005435.1-201ENST00000529293 1178 ntBASIC25.02■■□□□ 1.6
PGK1P00558 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC25.02■■□□□ 1.6
PGK1P00558 DUX4L4-201ENST00000566884 1269 ntBASIC25.02■■□□□ 1.6
PGK1P00558 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC25.02■■□□□ 1.6
PGK1P00558 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC25.02■■□□□ 1.6
PGK1P00558 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PGK1P00558 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
PGK1P00558 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
PGK1P00558 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PGK1P00558 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PGK1P00558 KRT18P61-201ENST00000585825 1298 ntBASIC25.01■■□□□ 1.59
PGK1P00558 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PGK1P00558 FP325331.1-202ENST00000623531 1380 ntBASIC25.01■■□□□ 1.59
PGK1P00558 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC25.01■■□□□ 1.59
PGK1P00558 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PGK1P00558 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.01■■□□□ 1.59
PGK1P00558 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.01■■□□□ 1.59
PGK1P00558 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25■■□□□ 1.59
PGK1P00558 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25■■□□□ 1.59
PGK1P00558 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC25■■□□□ 1.59
PGK1P00558 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25■■□□□ 1.59
PGK1P00558 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25■■□□□ 1.59
PGK1P00558 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
PGK1P00558 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PGK1P00558 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC25■■□□□ 1.59
PGK1P00558 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms