Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 PLK1-203ENST00000562407 540 ntTSL 210.74□□□□□ -0.692e-8■■■■□ 22
SMNDC1O75940 MICALL2-204ENST00000467394 2080 ntTSL 220.02■□□□□ 0.86e-7■■■■□ 22
SMNDC1O75940 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.14■□□□□ 0.333e-6■■■■□ 21.9
SMNDC1O75940 RPL12-203ENST00000497322 2275 ntTSL 216.58■□□□□ 0.255e-7■■■■□ 21.9
SMNDC1O75940 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.233e-6■■■■□ 21.9
SMNDC1O75940 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.153e-9■■■■□ 21.9
SMNDC1O75940 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.91■□□□□ 0.147e-17■■■■□ 21.9
SMNDC1O75940 RPL12-204ENST00000497825 864 ntTSL 215.9■□□□□ 0.145e-7■■■■□ 21.9
SMNDC1O75940 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.073e-7■■■■□ 21.9
SMNDC1O75940 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.39□□□□□ -0.113e-7■■■■□ 21.9
SMNDC1O75940 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.169e-8■■■■□ 21.9
SMNDC1O75940 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC13.6□□□□□ -0.239e-8■■■■□ 21.9
SMNDC1O75940 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.22□□□□□ -0.293e-9■■■■□ 21.9
SMNDC1O75940 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC13.08□□□□□ -0.323e-9■■■■□ 21.9
SMNDC1O75940 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.343e-9■■■■□ 21.9
SMNDC1O75940 DAP3-202ENST00000368336 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.417e-17■■■■□ 21.9
SMNDC1O75940 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.477e-17■■■■□ 21.9
SMNDC1O75940 DAP3-203ENST00000421487 1470 ntTSL 2 BASIC11.23□□□□□ -0.617e-17■■■■□ 21.9
SMNDC1O75940 DAP3-225ENST00000535183 1894 ntTSL 2 BASIC10.74□□□□□ -0.697e-17■■■■□ 21.9
SMNDC1O75940 RPL12-205ENST00000536368 499 ntTSL 1 (best) BASIC10.2□□□□□ -0.785e-7■■■■□ 21.9
SMNDC1O75940 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.943e-9■■■■□ 21.9
SMNDC1O75940 ROBO1-206ENST00000484514 3236 ntTSL 28.27□□□□□ -1.093e-9■■■■□ 21.9
SMNDC1O75940 DAP3-217ENST00000477394 816 ntTSL 58.23□□□□□ -1.097e-17■■■■□ 21.9
SMNDC1O75940 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)8.2□□□□□ -1.12e-7■■■■□ 21.9
SMNDC1O75940 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.135e-7■■■■□ 21.9
SMNDC1O75940 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.143e-9■■■■□ 21.9
SMNDC1O75940 ROBO1-211ENST00000498428 3566 ntTSL 27.93□□□□□ -1.143e-9■■■■□ 21.9
SMNDC1O75940 DAP3-216ENST00000476444 679 ntTSL 27.64□□□□□ -1.197e-17■■■■□ 21.9
SMNDC1O75940 DAP3-220ENST00000490249 710 ntTSL 36.39□□□□□ -1.397e-17■■■■□ 21.9
SMNDC1O75940 DAP3-207ENST00000463295 607 ntTSL 55.35□□□□□ -1.557e-17■■■■□ 21.9
SMNDC1O75940 DAP3-215ENST00000475056 682 ntTSL 34.31□□□□□ -1.727e-17■■■■□ 21.9
SMNDC1O75940 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.69□□□□□ -0.384e-48■■■■□ 21.9
SMNDC1O75940 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.52■■□□□ 1.048e-10■■■■□ 21.9
SMNDC1O75940 PILRB-210ENST00000457519 2074 ntTSL 1 (best)18.91■□□□□ 0.628e-10■■■■□ 21.9
SMNDC1O75940 PILRB-202ENST00000422808 1599 ntTSL 1 (best)17.95■□□□□ 0.468e-10■■■■□ 21.9
SMNDC1O75940 PILRB-204ENST00000438028 1822 ntTSL 1 (best)17.82■□□□□ 0.448e-10■■■■□ 21.9
SMNDC1O75940 PILRB-206ENST00000443526 1364 ntTSL 1 (best)16.77■□□□□ 0.278e-10■■■■□ 21.9
SMNDC1O75940 PILRB-201ENST00000419749 1506 ntTSL 1 (best)15.96■□□□□ 0.158e-10■■■■□ 21.9
SMNDC1O75940 PILRB-211ENST00000493091 4345 ntTSL 213.53□□□□□ -0.248e-10■■■■□ 21.9
SMNDC1O75940 TANGO2-208ENST00000430807 733 ntTSL 320.23■□□□□ 0.832e-7■■■■□ 21.9
SMNDC1O75940 TANGO2-206ENST00000411907 568 ntTSL 419.7■□□□□ 0.742e-7■■■■□ 21.9
SMNDC1O75940 TANGO2-211ENST00000434168 862 ntTSL 316.86■□□□□ 0.292e-7■■■■□ 21.9
SMNDC1O75940 TANGO2-216ENST00000450664 570 ntTSL 415.7■□□□□ 0.12e-7■■■■□ 21.9
SMNDC1O75940 TANGO2-219ENST00000471707 745 ntTSL 514.67□□□□□ -0.062e-7■■■■□ 21.9
SMNDC1O75940 EPB41L4A-AS1-202ENST00000427306 1367 ntTSL 220.96■□□□□ 0.953e-86■■■■□ 21.9
SMNDC1O75940 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.37■□□□□ 0.373e-86■■■■□ 21.9
SMNDC1O75940 EPB41L4A-AS1-203ENST00000442823 578 ntTSL 215.8■□□□□ 0.123e-86■■■■□ 21.9
SMNDC1O75940 EPB41L4A-AS1-204ENST00000508590 292 ntTSL 314.71□□□□□ -0.053e-86■■■■□ 21.9
SMNDC1O75940 SNORA13-201ENST00000458790 133 ntBASIC-0.18□□□□□ -2.443e-86■■■■□ 21.9
SMNDC1O75940 NADK-203ENST00000342348 1722 ntAPPRIS ALT2 TSL 215.62■□□□□ 0.093e-6■■■■□ 21.8
SMNDC1O75940 SKI-202ENST00000478223 294 ntTSL 310.47□□□□□ -0.732e-6■■■■□ 21.8
SMNDC1O75940 RPL23-209ENST00000584056 549 ntTSL 210.11□□□□□ -0.796e-89■■■■□ 21.8
SMNDC1O75940 SNORA21-201ENST00000362423 132 ntBASIC5.48□□□□□ -1.536e-89■■■■□ 21.8
SMNDC1O75940 SNORD49B-201ENST00000365172 72 ntBASIC0.16□□□□□ -2.385e-24■■■■□ 21.8
SMNDC1O75940 RNU6-2-201ENST00000384627 107 ntBASIC4.85□□□□□ -1.634e-32■■■■□ 21.8
SMNDC1O75940 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.752e-6■■■■□ 21.8
SMNDC1O75940 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.322e-6■■■■□ 21.7
SMNDC1O75940 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.22e-6■■■■□ 21.7
SMNDC1O75940 KIF18B-202ENST00000587309 4217 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.712e-6■■■■□ 21.7
SMNDC1O75940 DDX5-214ENST00000580026 1171 ntTSL 29.11□□□□□ -0.957e-28■■■■□ 21.7
SMNDC1O75940 DDX5-216ENST00000581237 592 ntTSL 56.74□□□□□ -1.337e-28■■■■□ 21.7
SMNDC1O75940 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.762e-8■■■■□ 21.7
SMNDC1O75940 HAUS7-207ENST00000484394 1927 ntTSL 219.79■□□□□ 0.762e-8■■■■□ 21.7
SMNDC1O75940 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.5■□□□□ 0.552e-8■■■■□ 21.7
SMNDC1O75940 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.542e-8■■■■□ 21.7
SMNDC1O75940 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.89■□□□□ 0.452e-8■■■■□ 21.7
SMNDC1O75940 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.382e-8■■■■□ 21.7
SMNDC1O75940 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.88□□□□□ -0.192e-8■■■■□ 21.7
SMNDC1O75940 HAUS7-203ENST00000435662 843 ntAPPRIS ALT2 TSL 513.05□□□□□ -0.322e-8■■■■□ 21.7
SMNDC1O75940 HAUS7-210ENST00000491286 851 ntTSL 311.79□□□□□ -0.522e-8■■■■□ 21.7
SMNDC1O75940 HAUS7-205ENST00000460898 491 ntTSL 311.32□□□□□ -0.62e-8■■■■□ 21.7
SMNDC1O75940 GREB1-203ENST00000381483 2347 ntTSL 1 (best) BASIC10.84□□□□□ -0.672e-8■■■■□ 21.7
SMNDC1O75940 GREB1-202ENST00000263834 2448 ntTSL 1 (best) BASIC10.56□□□□□ -0.722e-8■■■■□ 21.7
SMNDC1O75940 HAUS7-204ENST00000437046 543 ntTSL 29.91□□□□□ -0.822e-8■■■■□ 21.7
SMNDC1O75940 GREB1-208ENST00000470980 833 ntTSL 38.52□□□□□ -1.052e-8■■■■□ 21.7
SMNDC1O75940 RNU2-13P-201ENST00000515909 113 ntBASIC2.66□□□□□ -1.982e-8■■■■□ 21.7
SMNDC1O75940 RPL7A-203ENST00000426651 1057 ntTSL 517.84■□□□□ 0.451e-71■■■■□ 21.7
SMNDC1O75940 RPL7A-206ENST00000485706 743 ntTSL 211.41□□□□□ -0.581e-71■■■■□ 21.7
SMNDC1O75940 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.83■■□□□ 1.093e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.953e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-217ENST00000526786 1246 ntTSL 220.67■□□□□ 0.93e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-241ENST00000531931 614 ntTSL 320.67■□□□□ 0.93e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.863e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.833e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-212ENST00000525695 907 ntTSL 520.21■□□□□ 0.833e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.493e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.423e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-235ENST00000530848 688 ntTSL 317.4■□□□□ 0.383e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.263e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.57■□□□□ 0.243e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-249ENST00000533749 633 ntTSL 515.86■□□□□ 0.133e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.6■□□□□ 0.093e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-224ENST00000529007 861 ntTSL 215.6■□□□□ 0.093e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-206ENST00000524397 957 ntTSL 315.6■□□□□ 0.093e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.033e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-250ENST00000533833 831 ntTSL 515.11■□□□□ 0.013e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-244ENST00000532543 791 ntTSL 314.72□□□□□ -0.053e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.153e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-230ENST00000530191 853 ntTSL 313.81□□□□□ -0.23e-7■■■■□ 21.7
SMNDC1O75940 EEF1D-251ENST00000534232 817 ntTSL 513.53□□□□□ -0.243e-7■■■■□ 21.7
Retrieved 100 of 11,362 protein–RNA pairs in 185.1 ms