Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC36.96■■■■□ 3.51
CHD1O14646 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC36.96■■■■□ 3.51
CHD1O14646 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC36.96■■■■□ 3.51
CHD1O14646 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
CHD1O14646 KRT18P11-201ENST00000435214 1283 ntBASIC36.96■■■■□ 3.51
CHD1O14646 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC36.96■■■■□ 3.51
CHD1O14646 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC36.96■■■■□ 3.51
CHD1O14646 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
CHD1O14646 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
CHD1O14646 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC36.95■■■■□ 3.51
CHD1O14646 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC36.95■■■■□ 3.51
CHD1O14646 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC36.95■■■■□ 3.51
CHD1O14646 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC36.95■■■■□ 3.51
CHD1O14646 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC36.95■■■■□ 3.51
CHD1O14646 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC36.94■■■■□ 3.5
CHD1O14646 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC36.94■■■■□ 3.5
CHD1O14646 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
CHD1O14646 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC36.94■■■■□ 3.5
CHD1O14646 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC36.94■■■■□ 3.5
CHD1O14646 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC36.94■■■■□ 3.5
CHD1O14646 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC36.93■■■■□ 3.5
CHD1O14646 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC36.93■■■■□ 3.5
CHD1O14646 DUX4L4-201ENST00000566884 1269 ntBASIC36.93■■■■□ 3.5
CHD1O14646 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
CHD1O14646 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC36.93■■■■□ 3.5
CHD1O14646 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC36.93■■■■□ 3.5
CHD1O14646 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC36.93■■■■□ 3.5
CHD1O14646 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC36.93■■■■□ 3.5
CHD1O14646 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC36.92■■■■□ 3.5
CHD1O14646 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC36.92■■■■□ 3.5
CHD1O14646 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC36.92■■■■□ 3.5
CHD1O14646 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC36.91■■■■□ 3.5
CHD1O14646 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CHD1O14646 FAM201B-201ENST00000458407 597 ntBASIC36.9■■■■□ 3.5
CHD1O14646 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC36.9■■■■□ 3.5
CHD1O14646 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC36.9■■■■□ 3.5
CHD1O14646 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC36.9■■■■□ 3.5
CHD1O14646 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC36.9■■■■□ 3.5
CHD1O14646 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC36.9■■■■□ 3.5
CHD1O14646 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC36.9■■■■□ 3.5
CHD1O14646 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC36.89■■■■□ 3.5
CHD1O14646 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
CHD1O14646 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC36.89■■■■□ 3.5
CHD1O14646 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC36.89■■■■□ 3.5
CHD1O14646 OAS3-207ENST00000551007 998 ntTSL 2 BASIC36.89■■■■□ 3.5
CHD1O14646 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC36.89■■■■□ 3.5
CHD1O14646 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC36.89■■■■□ 3.5
CHD1O14646 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC36.89■■■■□ 3.5
CHD1O14646 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC36.89■■■■□ 3.5
CHD1O14646 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.5
CHD1O14646 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC36.88■■■■□ 3.49
CHD1O14646 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
CHD1O14646 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC36.88■■■■□ 3.49
CHD1O14646 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC36.88■■■■□ 3.49
CHD1O14646 ITM2C-210ENST00000620962 501 ntBASIC36.88■■■■□ 3.49
CHD1O14646 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
CHD1O14646 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
CHD1O14646 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC36.88■■■■□ 3.49
CHD1O14646 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC36.88■■■■□ 3.49
CHD1O14646 RPS2P52-201ENST00000469610 820 ntBASIC36.88■■■■□ 3.49
CHD1O14646 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
CHD1O14646 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC36.87■■■■□ 3.49
CHD1O14646 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC36.87■■■■□ 3.49
CHD1O14646 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC36.87■■■■□ 3.49
CHD1O14646 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC36.86■■■■□ 3.49
CHD1O14646 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC36.86■■■■□ 3.49
CHD1O14646 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC36.86■■■■□ 3.49
CHD1O14646 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
CHD1O14646 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC36.86■■■■□ 3.49
CHD1O14646 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
CHD1O14646 TBCB-214ENST00000629269 413 ntTSL 5 BASIC36.86■■■■□ 3.49
CHD1O14646 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
CHD1O14646 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
CHD1O14646 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
CHD1O14646 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
CHD1O14646 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
CHD1O14646 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
CHD1O14646 AC098590.1-201ENST00000468126 897 ntBASIC36.85■■■■□ 3.49
CHD1O14646 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC36.85■■■■□ 3.49
CHD1O14646 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC36.84■■■■□ 3.49
CHD1O14646 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
CHD1O14646 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
CHD1O14646 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC36.84■■■■□ 3.49
CHD1O14646 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC36.84■■■■□ 3.49
CHD1O14646 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC36.83■■■■□ 3.49
CHD1O14646 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC36.83■■■■□ 3.49
CHD1O14646 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
CHD1O14646 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC36.83■■■■□ 3.49
CHD1O14646 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC36.83■■■■□ 3.49
CHD1O14646 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
CHD1O14646 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
CHD1O14646 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
CHD1O14646 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC36.82■■■■□ 3.49
CHD1O14646 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC36.82■■■■□ 3.49
CHD1O14646 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC36.82■■■■□ 3.49
CHD1O14646 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC36.82■■■■□ 3.49
CHD1O14646 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC36.82■■■■□ 3.49
CHD1O14646 AC139426.1-201ENST00000568218 2529 ntBASIC36.82■■■■□ 3.49
CHD1O14646 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC36.82■■■■□ 3.48
CHD1O14646 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms