Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 GUCY2EP-203ENST00000531117 1918 ntBASIC16.2■□□□□ 0.18
MRE11P49959 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 AL162391.1-201ENST00000419853 2102 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.2■□□□□ 0.18
MRE11P49959 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.2■□□□□ 0.18
MRE11P49959 LINC01428-201ENST00000449581 874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 AC245884.6-201ENST00000515672 1067 ntBASIC16.2■□□□□ 0.18
MRE11P49959 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 AC091812.3-201ENST00000621362 345 ntBASIC16.2■□□□□ 0.18
MRE11P49959 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 AC048382.5-201ENST00000618330 3667 ntTSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.2■□□□□ 0.18
MRE11P49959 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
MRE11P49959 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 NUF2-201ENST00000271452 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 SARDH-204ENST00000371872 3344 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MRE11P49959 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC16.2■□□□□ 0.18
MRE11P49959 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 AC009093.10-201ENST00000641956 1442 ntBASIC16.19■□□□□ 0.18
MRE11P49959 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 ZNF133-201ENST00000316358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 PAX2-201ENST00000355243 4057 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.19■□□□□ 0.18
MRE11P49959 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.19■□□□□ 0.18
MRE11P49959 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 RN7SL720P-201ENST00000488178 304 ntBASIC16.19■□□□□ 0.18
MRE11P49959 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.19■□□□□ 0.18
MRE11P49959 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.19■□□□□ 0.18
MRE11P49959 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.19■□□□□ 0.18
MRE11P49959 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 BX088702.1-201ENST00000610784 235 ntBASIC16.19■□□□□ 0.18
MRE11P49959 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 KRT42P-201ENST00000398469 2864 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MRE11P49959 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.19■□□□□ 0.18
MRE11P49959 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MRE11P49959 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
MRE11P49959 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MRE11P49959 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
MRE11P49959 MME-204ENST00000462745 3590 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
MRE11P49959 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
MRE11P49959 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms