Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC15.67■□□□□ 0.1
SMARCA1P28370 FAM187B2P-201ENST00000577135 713 ntBASIC15.67■□□□□ 0.1
SMARCA1P28370 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SMARCA1P28370 AC010976.2-201ENST00000609697 852 ntBASIC15.67■□□□□ 0.1
SMARCA1P28370 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC15.67■□□□□ 0.1
SMARCA1P28370 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 AL672207.1-201ENST00000328462 1570 ntBASIC15.66■□□□□ 0.1
SMARCA1P28370 CICP9-201ENST00000444451 1913 ntBASIC15.66■□□□□ 0.1
SMARCA1P28370 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 AL135901.1-201ENST00000451812 333 ntBASIC15.66■□□□□ 0.1
SMARCA1P28370 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC15.66■□□□□ 0.1
SMARCA1P28370 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC15.66■□□□□ 0.1
SMARCA1P28370 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC15.66■□□□□ 0.1
SMARCA1P28370 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC15.66■□□□□ 0.1
SMARCA1P28370 C2orf69P1-201ENST00000563532 1093 ntBASIC15.66■□□□□ 0.1
SMARCA1P28370 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC15.66■□□□□ 0.1
SMARCA1P28370 AC011471.3-201ENST00000623576 402 ntBASIC15.66■□□□□ 0.1
SMARCA1P28370 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SMARCA1P28370 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
SMARCA1P28370 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC15.66■□□□□ 0.1
SMARCA1P28370 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMARCA1P28370 KRT8P25-201ENST00000473150 1456 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SMARCA1P28370 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.65■□□□□ 0.1
SMARCA1P28370 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.65■□□□□ 0.1
SMARCA1P28370 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 GDA-203ENST00000376986 1771 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC15.65■□□□□ 0.1
SMARCA1P28370 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC15.65■□□□□ 0.1
SMARCA1P28370 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 KRT18P4-201ENST00000422599 1288 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 AC092810.2-201ENST00000431570 362 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 RN7SL351P-201ENST00000469306 248 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 AREG-202ENST00000502307 956 ntTSL 5 BASIC15.65■□□□□ 0.1
SMARCA1P28370 TBC1D3P6-201ENST00000505954 962 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC15.65■□□□□ 0.1
SMARCA1P28370 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC15.65■□□□□ 0.1
SMARCA1P28370 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC15.65■□□□□ 0.1
SMARCA1P28370 MIR5196-201ENST00000578146 115 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 MIR4750-201ENST00000584564 56 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms