Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 ZNF436-AS1-201ENST00000335648 2547 ntBASIC16.12■□□□□ 0.17
HLA-DOAP06340 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 HLA-DMA-202ENST00000395303 1007 ntBASIC16.11■□□□□ 0.17
HLA-DOAP06340 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 CD37-203ENST00000426897 1204 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 DDX39AP1-201ENST00000445147 1181 ntBASIC16.11■□□□□ 0.17
HLA-DOAP06340 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 RBM4-207ENST00000506523 654 ntTSL 3 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 PIGCP1-201ENST00000527583 895 ntBASIC16.11■□□□□ 0.17
HLA-DOAP06340 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AL139339.2-201ENST00000608063 657 ntBASIC16.11■□□□□ 0.17
HLA-DOAP06340 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AC064850.1-201ENST00000413279 1398 ntBASIC16.11■□□□□ 0.17
HLA-DOAP06340 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DOAP06340 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DOAP06340 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.11■□□□□ 0.17
HLA-DOAP06340 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 RPSAP12-201ENST00000435879 888 ntBASIC16.1■□□□□ 0.17
HLA-DOAP06340 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 SEPHS2P1-201ENST00000511618 1162 ntBASIC16.1■□□□□ 0.17
HLA-DOAP06340 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 JPT2-214ENST00000569765 782 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms